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    C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834858, updated on 18-Sep-2024

    Summary

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    Official Full Name
    C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
    Primary source
    TAIR:AT5G48060
    Locus tag
    AT5G48060
    See related
    Araport:AT5G48060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDN11.14; MDN11_14
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (19475296..19479066)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene Copia-like polyprotein/retrotransposon Neighboring gene xyloglucan endotransglucosylase/hydrolase 20 Neighboring gene EDM2-like protein1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Multiple C2 Domain and Transmembrane Region Proteins in Arabidopsis. Liu L, et al. Plant Physiol, 2018 Mar. PMID 29259105, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124180.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    colocalizes_with plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
    NP_199617.1
    • C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT5G06850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19475296..19479066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124180.3 → NP_199617.1  C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199617.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FI32
      UniProtKB/TrEMBL
      A0A178UHB0
      Conserved Domains (5) summary
      cd04019
      Location:460 → 613
      C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd04022
      Location:6 → 133
      C2A_MCTP_PRT_plant; C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08378
      Location:295 → 423
      C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08379
      Location:626 → 753
      C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      pfam08372
      Location:881 → 1036
      PRT_C; Plant phosphoribosyltransferase C-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FI32.1

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