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    Rab5-interacting family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835015, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rab5-interacting family protein
    Primary source
    TAIR:AT5G49540
    Locus tag
    AT5G49540
    See related
    Araport:AT5G49540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K6M13.9; K6M13_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (20104481..20106278, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene SIN-like family protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene biogenesis of lysosome organelles complex 1 subunit-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001344849.1
    NM_124331.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of EMC complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Rab5-interacting family protein
    NP_568710.1
    • Rab5-interacting family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF786 (InterPro:IPR008504); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20104481..20106278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124331.4 → NP_568710.1  Rab5-interacting family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568710.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIC2, Q9AST5
      Conserved Domains (1) summary
      pfam07019
      Location:29 → 105
      Rab5ip; Rab5-interacting protein (Rab5ip)

    2. NM_001344849.1 → NP_001331350.1  Rab5-interacting family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UH14, A0A1P8BDQ1, A0A384LG92
      Conserved Domains (1) summary
      pfam07019
      Location:29 → 105
      Rab5ip; Rab5-interacting protein (Rab5ip)
    Nucleotide Protein
    Heading Accession and Version

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