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    U-box domain-containing protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836277, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U-box domain-containing protein kinase family protein
    Primary source
    TAIR:AT5G61560
    Locus tag
    AT5G61560
    See related
    Araport:AT5G61560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K11J9.9; K11J9_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (24752783..24756768)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Neighboring gene ncRNA Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene Protein kinase superfamily protein Neighboring gene phosphofructokinase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203660.1
    NM_001345483.1
    NM_001345484.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    U-box domain-containing protein kinase family protein
    NP_001190589.1
    • U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).
    NP_200964.2
    • U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24752783..24756768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345482.1 → NP_001330717.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8X4, A0A178U961, A0A1P8BBM2, A0A384L4A3
      Conserved Domains (4) summary
      smart00504
      Location:747 → 809
      Ubox; Modified RING finger domain
      COG1196
      Location:317 → 424
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd01989
      Location:26 → 173
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:454 → 722
      PKc_like; Protein Kinases, catalytic domain

    2. NM_125549.3 → NP_200964.2  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200964.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQF2, Q9FKG5
      UniProtKB/TrEMBL
      A0A178U788, A0A178U961
      Conserved Domains (4) summary
      smart00504
      Location:728 → 790
      Ubox; Modified RING finger domain
      COG1196
      Location:298 → 405
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd01989
      Location:7 → 154
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:435 → 703
      PKc_like; Protein Kinases, catalytic domain

    3. NM_001203660.1 → NP_001190589.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190589.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U961, F4K3J6
      Conserved Domains (4) summary
      smart00504
      Location:726 → 788
      Ubox; Modified RING finger domain
      smart00220
      Location:432 → 631
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd01989
      Location:7 → 154
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:433 → 701
      PKc_like; Protein Kinases, catalytic domain

    4. NM_001345483.1 → NP_001330716.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8X4, A0A178U961, A0A1P8BBM2, A0A384L4A3
      Conserved Domains (4) summary
      smart00504
      Location:747 → 809
      Ubox; Modified RING finger domain
      COG1196
      Location:317 → 424
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd01989
      Location:26 → 173
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:454 → 722
      PKc_like; Protein Kinases, catalytic domain

    5. NM_001345484.1 → NP_001330718.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQF2, Q9FKG5
      UniProtKB/TrEMBL
      A0A178U788, A0A178U961
      Conserved Domains (4) summary
      smart00504
      Location:728 → 790
      Ubox; Modified RING finger domain
      COG1196
      Location:298 → 405
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd01989
      Location:7 → 154
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:435 → 703
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKG5.2

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