U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DIN10 Raffinose synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832147, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    DIN10
    Official Full Name
    Raffinose synthase family protein
    Primary source
    TAIR:AT5G20250
    Locus tag
    AT5G20250
    See related
    Araport:AT5G20250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DARK INDUCIBLE 10; F5O24.140; F5O24_140; raffinose synthase 6; RS6
    Summary
    encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DIN10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (6833564..6836862)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene miscRNA Neighboring gene Exostosin family protein Neighboring gene heptahelical transmembrane protein1 Neighboring gene sucrose phosphate synthase 1F

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Maruyama K, et al. Plant Physiol, 2009 Aug. PMID 19502356, Free PMC Article
    2. Galactinol and raffinose constitute a novel function to protect plants from oxidative damage. Nishizawa A, et al. Plant Physiol, 2008 Jul. PMID 18502973, Free PMC Article
    3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036833.2
    NM_001203418.1
    NM_122032.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables galactinol-sucrose galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Raffinose synthase family protein
    NP_001031910.1
    • DARK INDUCIBLE 10 (DIN10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to karrikin, aging, response to light stimulus, response to cold, response to sucrose stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1); Has 568 Blast hits to 539 proteins in 163 species: Archae - 27; Bacteria - 128; Metazoa - 0; Fungi - 82; Plants - 321; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    NP_001190347.1
    • DARK INDUCIBLE 10 (DIN10); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1).
    NP_197525.1
    • DARK INDUCIBLE 10 (DIN10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to karrikin, aging, response to light stimulus, response to cold, response to sucrose stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1); Has 568 Blast hits to 539 proteins in 163 species: Archae - 27; Bacteria - 128; Metazoa - 0; Fungi - 82; Plants - 321; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    NP_851044.2
    • DARK INDUCIBLE 10 (DIN10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to karrikin, aging, response to light stimulus, response to cold, response to sucrose stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1); Has 568 Blast hits to 539 proteins in 163 species: Archae - 27; Bacteria - 128; Metazoa - 0; Fungi - 82; Plants - 321; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6833564..6836862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180713.4 → NP_851044.2  Raffinose synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851044.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFC4, B9DGW6, Q56X69, Q8RX87
      UniProtKB/TrEMBL
      A0A178UIU5
      Conserved Domains (1) summary
      PLN02684
      Location:1 → 749
      PLN02684; Probable galactinol--sucrose galactosyltransferase

    2. NM_122032.6 → NP_197525.1  Raffinose synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197525.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFC4, B9DGW6, Q56X69, Q8RX87
      UniProtKB/TrEMBL
      A0A178UIU5
      Conserved Domains (1) summary
      PLN02684
      Location:1 → 749
      PLN02684; Probable galactinol--sucrose galactosyltransferase

    3. NM_001036833.2 → NP_001031910.1  Raffinose synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031910.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFC4, B9DGW6, Q56X69, Q8RX87
      UniProtKB/TrEMBL
      A0A178UIU5
      Conserved Domains (1) summary
      PLN02684
      Location:1 → 749
      PLN02684; Probable galactinol--sucrose galactosyltransferase

    4. NM_001203418.1 → NP_001190347.1  Raffinose synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190347.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2W5, F4K470
      Conserved Domains (1) summary
      PLN02684
      Location:96 → 844
      PLN02684; Probable galactinol--sucrose galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RX87.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.