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    DWNN domain, a CCHC-type zinc finger [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827452, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DWNN domain, a CCHC-type zinc finger
    Primary source
    TAIR:AT4G17410
    Locus tag
    AT4G17410
    See related
    Araport:AT4G17410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4740W; FCAALL.426
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (9715761..9721932)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene MUTS-like protein 4 Neighboring gene Ribosomal protein L23/L15e family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tryptophan RNA-binding attenuator protein-like protein Neighboring gene O-fucosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PARAQUAT TOLERANCE3 Is an E3 Ligase That Switches off Activated Oxidative Response by Targeting Histone-Modifying PROTEIN METHYLTRANSFERASE4b. Luo C, et al. PLoS Genet, 2016 Sep. PMID 27676073, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341221.1
    NM_001341222.1
    NM_117844.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ubiquitin-like protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to paraquat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to cadmium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to hydrogen peroxide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to mannitol IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to oxidative stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to paraquat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DWNN domain, a CCHC-type zinc finger
    NP_001190750.1
    • DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT5G47430.1).
    NP_001190751.1
    • DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT5G47430.1).
    NP_193471.2
    • DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT5G47430.1); Has 9457 Blast hits to 6950 proteins in 351 species: Archae - 2; Bacteria - 103; Metazoa - 5659; Fungi - 1428; Plants - 824; Viruses - 57; Other Eukaryotes - 1384 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9715761..9721932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203821.2 → NP_001190750.1  DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190750.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR6
      Conserved Domains (4) summary
      COG5222
      Location:3 → 351
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam08226
      Location:490 → 565
      DUF1720; Domain of unknown function (DUF1720)
      pfam08783
      Location:3 → 75
      DWNN; DWNN domain
      pfam13696
      Location:198 → 216
      zf-CCHC_2; Zinc knuckle

    2. NM_001203822.1 → NP_001190751.1  DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190751.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR6
      Conserved Domains (4) summary
      COG5222
      Location:3 → 351
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam08226
      Location:490 → 565
      DUF1720; Domain of unknown function (DUF1720)
      pfam08783
      Location:3 → 75
      DWNN; DWNN domain
      pfam13696
      Location:198 → 216
      zf-CCHC_2; Zinc knuckle

    3. NM_001341220.1 → NP_001328572.1  DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1H4, A0A1P8B518

    4. NM_117844.5 → NP_193471.2  DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193471.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JP50, F4JP52, O23583, O23584, Q0WV36
      UniProtKB/TrEMBL
      A0A178UXR6
      Conserved Domains (4) summary
      COG5222
      Location:3 → 351
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam08226
      Location:489 → 564
      DUF1720; Domain of unknown function (DUF1720)
      pfam08783
      Location:3 → 75
      DWNN; DWNN domain
      pfam13696
      Location:198 → 216
      zf-CCHC_2; Zinc knuckle

    5. NM_001341221.1 → NP_001328573.1  DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JP50, F4JP52, O23583, O23584, Q0WV36
      UniProtKB/TrEMBL
      A0A178UXR6
      Conserved Domains (4) summary
      COG5222
      Location:3 → 351
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam08226
      Location:489 → 564
      DUF1720; Domain of unknown function (DUF1720)
      pfam08783
      Location:3 → 75
      DWNN; DWNN domain
      pfam13696
      Location:198 → 216
      zf-CCHC_2; Zinc knuckle

    6. NM_001341222.1 → NP_001328571.1  DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1H4, A0A1P8B518
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JP52.1

    Gene LinkOut

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