SMU2 RED family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: SMU2
Official Full Name: RED family protein
Primary source: TAIR:AT2G26460
Locus tag: AT2G26460
See related: Araport:AT2G26460
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: SUPPRESSORS OF MEC-8 AND UNC-52 2; T9J22.13; T9J22_13
Summary: Encodes SMU2, a protein involved in RNA splicing.
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Genomic context

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See SMU2 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 11

Sequence:: Chromosome: 2; NC_003071.7 (11254932..11259070, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The Atsmu2 mutations cause pre-mRNA splicing defects. [SMU2]
Title: Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_128203.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA splicing	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nuclear speck	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: RED family protein

NP_180214.1

SUPPRESSORS OF MEC-8 AND UNC-52 2 (SMU2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA splicing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RED-like, N-terminal (InterPro:IPR012916), RED-like, C-terminal (InterPro:IPR012492); Has 470 Blast hits to 361 proteins in 150 species: Archae - 0; Bacteria - 2; Metazoa - 251; Fungi - 94; Plants - 62; Viruses - 3; Other Eukaryotes - 58 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

11254932..11259070 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_128203.2 → NP_180214.1 RED family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_180214.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O48713

UniProtKB/TrEMBL

A0A178VYL3, A0A5S9X1L0, A0A654EXU3

Conserved Domains (2) summary

pfam07807
Location:461 → 567

RED_C; RED-like protein C-terminal region

pfam07808
Location:13 → 214

RED_N; RED-like protein N-terminal region