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    LOC396480 keratin [ Gallus gallus (chicken) ]

    Gene ID: 396480, updated on 3-Dec-2024

    Summary

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    Symbol
    LOC396480provided by CGNC
    Full Name
    keratinprovided by CGNC
    Primary source
    CGNC:49829
    See related
    Ensembl:ENSGALG00010028513
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    sKer
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    Genomic context

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    See LOC396480 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (1410530..1416745)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (1411808..1418031)

    Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene scale keratin-like Neighboring gene keratin Neighboring gene scale keratin-like Neighboring gene scale keratin-like Neighboring gene scale keratin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comparison of genomic coding sequences for feather and scale keratins: structural and evolutionary implications. Gregg K, et al. EMBO J, 1984 Jan. PMID 6200321, Free PMC Article
    2. Expression of beta-keratin genes during development of avian skin appendages. Shames RB, et al. Curr Top Dev Biol, 1987. PMID 2443313
    3. Isolation and characterisation of keratin mRNA from the scale epidermis of the embryonic chick. Wilton SD, et al. Biochim Biophys Acta, 1985 Mar 20. PMID 2578818
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scale keratin
    Names
    S-ker

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277979.1 → NP_001264908.1  scale keratin

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000349
      UniProtKB/Swiss-Prot
      P04459, P87483, P87484
      UniProtKB/TrEMBL
      H9KZL7
      Conserved Domains (1) summary
      pfam02422
      Location:13 → 70
      Keratin

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1410530..1416745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046903921.1 → XP_046759877.1  scale keratin isoform X1

      UniProtKB/Swiss-Prot
      P04459, P87483, P87484
      UniProtKB/TrEMBL
      H9KZL7
      Related
      ENSGALP00010042489.1, ENSGALT00010069047.1

    2. XM_040652322.2 → XP_040508256.1  scale keratin isoform X1

      UniProtKB/Swiss-Prot
      P04459, P87483, P87484
      UniProtKB/TrEMBL
      H9KZL7
      Conserved Domains (1) summary
      pfam02422
      Location:13 → 70
      Keratin

    3. XM_046903920.1 → XP_046759876.1  scale keratin isoform X1

      UniProtKB/Swiss-Prot
      P04459, P87483, P87484
      UniProtKB/TrEMBL
      H9KZL7
      Related
      ENSGALP00010042487.1, ENSGALT00010069045.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1411808..1418031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046932565.1 → XP_046788521.1  scale keratin isoform X1

      UniProtKB/Swiss-Prot
      P04459, P87483, P87484
      UniProtKB/TrEMBL
      H9KZL7

    2. XM_046932566.1 → XP_046788522.1  scale keratin isoform X1

      UniProtKB/Swiss-Prot
      P04459, P87483, P87484
      UniProtKB/TrEMBL
      H9KZL7

    3. XM_046932564.1 → XP_046788520.1  scale keratin isoform X1

      UniProtKB/Swiss-Prot
      P04459, P87483, P87484
      UniProtKB/TrEMBL
      H9KZL7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P04459.3 GenPept UniProtKB/Swiss-Prot:P04459

    Gene LinkOut

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