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    Clrn3 clarin 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309082, updated on 27-Nov-2024

    Summary

    Official Symbol
    Clrn3provided by RGD
    Official Full Name
    clarin 3provided by RGD
    Primary source
    RGD:1305043
    See related
    EnsemblRapid:ENSRNOG00000028288 AllianceGenome:RGD:1305043
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tmem12; RGD1305043
    Summary
    Predicted to be involved in sensory perception of sound. Predicted to be located in membrane. Orthologous to human CLRN3 (clarin 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 173.3) See more
    Orthologs
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    Genomic context

    See Clrn3 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (199748863..199764486, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (190319025..190334648, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (207750627..207766250, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene forkhead box I2 Neighboring gene uncharacterized LOC134485187 Neighboring gene protein tyrosine phosphatase, receptor type, E Neighboring gene uncharacterized LOC102551963 Neighboring gene marker of proliferation Ki-67

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    clarin-3
    Names
    transmembrane protein 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014026.1NP_001014048.1  clarin-3

      See identical proteins and their annotated locations for NP_001014048.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078942
      UniProtKB/Swiss-Prot
      Q6AYR5
      UniProtKB/TrEMBL
      A6HX61
      Related
      ENSRNOP00000035233.3, ENSRNOT00000031397.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      199748863..199764486 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)