U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    XTH4 xyloglucan endotransglucosylase/hydrolase 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815247, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    XTH4
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 4
    Primary source
    TAIR:AT2G06850
    Locus tag
    AT2G06850
    See related
    Araport:AT2G06850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ENDOXYLOGLUCAN TRANSFERASE; endoxyloglucan transferase A1; EXGT-A1; EXT; T9F8.4; T9F8_4; xyloglucan endotransglucosylase/hydrolase 4
    Summary
    endoxyloglucan transferase (EXGT-A1) gene
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XTH4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (2763449..2765743)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Beta-galactosidase related protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis XET-related gene family: environmental and hormonal regulation of expression. Xu W, et al. Plant J, 1996 Jun. PMID 8696366
    2. Endo-xyloglucan transferase, a novel class of glycosyltransferase that catalyzes transfer of a segment of xyloglucan molecule to another xyloglucan molecule. Nishitani K, et al. J Biol Chem, 1992 Oct 15. PMID 1400418
    3. Arabidopsis XTH4 and XTH9 Contribute to Wood Cell Expansion and Secondary Wall Formation. Kushwah S, et al. Plant Physiol, 2020 Apr. PMID 32005783, Free PMC Article
    4. Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Akamatsu T, et al. Plant Physiol, 1999 Nov. PMID 10557219, Free PMC Article
    5. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001335308.1
    NM_126666.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables xyloglucan:xyloglucosyl transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type secondary cell wall biogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to low light intensity stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to mechanical stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in extracellular region IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 4
    NP_178708.1
    • xyloglucan endotransglucosylase/hydrolase 4 (XTH4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to auxin stimulus, response to mechanical stimulus, response to low light intensity stimulus, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2146 Blast hits to 2126 proteins in 304 species: Archae - 0; Bacteria - 263; Metazoa - 0; Fungi - 414; Plants - 1383; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2763449..2765743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126666.4 → NP_178708.1  xyloglucan endotransglucosylase/hydrolase 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178708.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39099, Q94F33
      UniProtKB/TrEMBL
      A0A178VUP5, A0A5S9WXJ0
      Conserved Domains (1) summary
      cd02176
      Location:30 → 290
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

    2. NM_001335308.1 → NP_001325140.1  xyloglucan endotransglucosylase/hydrolase 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B288, B9DI24
      Conserved Domains (1) summary
      cd02176
      Location:4 → 230
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39099.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools