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    ABC4 UbiA prenyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842354, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABC4
    Official Full Name
    UbiA prenyltransferase family protein
    Primary source
    TAIR:AT1G60600
    Locus tag
    AT1G60600
    See related
    Araport:AT1G60600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    1; 4-DIHYDROXY-2-NAPTHOIC ACID PHYTYLTRANSFERASE; ABERRANT CHLOROPLAST DEVELOPMENT 4; F8A5.36; F8A5_36
    Summary
    Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.
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    Genomic context

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    See ABC4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (22324437..22327359, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene Pectin lyase-like superfamily protein Neighboring gene SBP (S-ribonuclease binding protein) family protein Neighboring gene RNA polymerase I subunit 43

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Inactivation and deficiency of core proteins of photosystems I and II caused by genetical phylloquinone and plastoquinone deficiency but retained lamellar structure in a T-DNA mutant of Arabidopsis. Shimada H, et al. Plant J, 2005 Feb. PMID 15686525
    2. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    3. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ABerrant Chloroplast development gene ABC4 was confirmed to be At1g60600.
      Title: Inactivation and deficiency of core proteins of photosystems I and II caused by genetical phylloquinone and plastoquinone deficiency but retained lamellar structure in a T-DNA mutant of Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001124046.2
    NM_104743.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 1,4-dihydroxy-2-naphthoate polyprenyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photosynthetic electron transport in photosystem II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within phylloquinone biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastoquinone biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UbiA prenyltransferase family protein
    NP_001117518.1
    • ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537), 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_176259.2
    • ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537), 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937); Has 2128 Blast hits to 2126 proteins in 766 species: Archae - 57; Bacteria - 1544; Metazoa - 40; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22324437..22327359 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124046.2 → NP_001117518.1  UbiA prenyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117518.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WUA3, Q6NLY2
      UniProtKB/TrEMBL
      A0A5S9WN30
      Conserved Domains (1) summary
      PLN02922
      Location:71 → 382
      PLN02922; prenyltransferase

    2. NM_104743.3 → NP_176259.2  UbiA prenyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176259.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WUA3
      Conserved Domains (1) summary
      PLN02922
      Location:1 → 287
      PLN02922; prenyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WUA3.2

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