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    RAB7A RAB GTPase homolog 7A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816724, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RAB7A
    Official Full Name
    RAB GTPase homolog 7A
    Primary source
    TAIR:AT2G21880
    Locus tag
    AT2G21880
    See related
    Araport:AT2G21880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS RAB GTPASE HOMOLOG G2; ATRAB7A; ATRABG2; F7D8.20; F7D8_20; RAB GTPase homolog 7A
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    Genomic context

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    See RAB7A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (9324633..9326426, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene violaxanthin de-epoxidase-like protein Neighboring gene MALE GAMETOPHYTE DEFECTIVE 1 Neighboring gene cinnamyl alcohol dehydrogenase homolog 3 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MONENSIN SENSITIVITY1 (MON1)/CALCIUM CAFFEINE ZINC SENSITIVITY1 (CCZ1)-Mediated Rab7 Activation Regulates Tapetal Programmed Cell Death and Pollen Development. Cui Y, et al. Plant Physiol, 2017 Jan. PMID 27799422, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MON1/CALCIUM CAFFEINE ZINC SENSITIVITY1 (CCZ1)-mediated Rab7 activation was indispensable for vacuolar trafficking of tapetum degradation-related cysteine proteases.
      Title: MONENSIN SENSITIVITY1 (MON1)/CALCIUM CAFFEINE ZINC SENSITIVITY1 (CCZ1)-Mediated Rab7 Activation Regulates Tapetal Programmed Cell Death and Pollen Development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001124885.1
    NM_001335777.1
    NM_001335778.1
    NM_127757.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    RAB GTPase homolog 7A
    NP_001118357.1
    • RAB GTPase homolog 7A (RAB7A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_565521.1
    • RAB GTPase homolog 7A (RAB7A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 26543 Blast hits to 26510 proteins in 728 species: Archae - 26; Bacteria - 127; Metazoa - 13845; Fungi - 3980; Plants - 2847; Viruses - 20; Other Eukaryotes - 5698 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9324633..9326426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127757.3 → NP_565521.1  RAB GTPase homolog 7A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565521.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H781, Q948K7, Q9SJ11
      UniProtKB/TrEMBL
      A0A178VZI8, A0A5S9X090, A0A7G2EA63
      Conserved Domains (1) summary
      cd01862
      Location:10 → 181
      Rab7; Rab GTPase family 7 (Rab7)

    2. NM_001124885.1 → NP_001118357.1  RAB GTPase homolog 7A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118357.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EA63
      Conserved Domains (2) summary
      smart00175
      Location:10 → 172
      RAB; Rab subfamily of small GTPases
      cd01862
      Location:10 → 173
      Rab7; Rab GTPase family 7 (Rab7)

    3. NM_001335778.1 → NP_001323598.1  RAB GTPase homolog 7A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXJ0, A0A7G2EA63

    4. NM_001335777.1 → NP_001323597.1  RAB GTPase homolog 7A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXJ0, A0A7G2EA63
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJ11.2

    Gene LinkOut

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