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    NOP10 nucleolar RNA-binding Nop10p family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816569, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NOP10
    Official Full Name
    nucleolar RNA-binding Nop10p family protein
    Primary source
    TAIR:AT2G20490
    Locus tag
    AT2G20490
    See related
    Araport:AT2G20490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EDA27; EMBRYO SAC DEVELOPMENT ARREST 27; T13C7.8; T13C7_8
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    Genomic context

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    See NOP10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (8831681..8832929)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Neighboring gene uncharacterized protein Neighboring gene Serine/Threonine-kinase Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene translocase inner membrane subunit 44-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Lorković ZJ, et al. Mol Biol Cell, 2004 Jul. PMID 15133128, Free PMC Article
    2. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036302.1
    NM_001335686.1
    NM_127608.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within polar nucleus fusion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Cajal body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleolar RNA-binding Nop10p family protein
    NP_001031379.1
    • NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nop10 (InterPro:IPR007264); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565472.1
    • NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nop10 (InterPro:IPR007264); Has 388 Blast hits to 388 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 120; Plants - 61; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8831681..8832929
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127608.4 → NP_565472.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565472.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93XX8, Q9SIM0
      UniProtKB/TrEMBL
      A0A178VV45, A0A5S9X002
      Conserved Domains (1) summary
      pfam04135
      Location:6 → 52
      Nop10p; Nucleolar RNA-binding protein, Nop10p family

    2. NM_001335686.1 → NP_001325224.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93XX8, Q9SIM0
      UniProtKB/TrEMBL
      A0A178VV45, A0A5S9X002
      Conserved Domains (1) summary
      pfam04135
      Location:6 → 52
      Nop10p; Nucleolar RNA-binding protein, Nop10p family

    3. NM_001036302.1 → NP_001031379.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031379.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IVE5
      Conserved Domains (1) summary
      pfam04135
      Location:6 → 51
      Nop10p; Nucleolar RNA-binding protein, Nop10p family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93XX8.2

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