U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837658, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
    Primary source
    TAIR:AT1G11170
    Locus tag
    AT1G11170
    See related
    Araport:AT1G11170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28P6.16; T28P6_16
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    19
    Sequence:
    Chromosome: 1; NC_003070.9 (3740664..3744675)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA Neighboring gene Secretory carrier membrane protein (SCAMP) family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001331965.1
    NM_001331966.1
    NM_001331967.1
    NM_001331968.1
    NM_001331969.1
    NM_001331970.1
    NM_100989.5
    NM_202080.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
    NP_172583.2
    • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4); Has 308 Blast hits to 308 proteins in 23 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_973809.1
    • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3740664..3744675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331964.1 → NP_001321494.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5L5, A0A1P8AR12

    2. NM_100989.5 → NP_172583.2  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172583.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TS48, Q8S9J5
      Conserved Domains (1) summary
      pfam05212
      Location:83 → 386
      DUF707; Protein of unknown function (DUF707)

    3. NM_001331965.1 → NP_001321488.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5L5, A0A1P8AR16

    4. NM_001331966.1 → NP_001321493.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TS48, Q8S9J5
      Conserved Domains (1) summary
      pfam05212
      Location:83 → 386
      DUF707; Protein of unknown function (DUF707)

    5. NM_001331967.1 → NP_001321491.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TS48, Q8S9J5
      Conserved Domains (1) summary
      pfam05212
      Location:83 → 386
      DUF707; Protein of unknown function (DUF707)

    6. NM_001331968.1 → NP_001321492.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TS48, Q8S9J5
      Conserved Domains (1) summary
      pfam05212
      Location:83 → 386
      DUF707; Protein of unknown function (DUF707)

    7. NM_202080.1 → NP_973809.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973809.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W670, F4I7E3
      Conserved Domains (1) summary
      pfam05212
      Location:83 → 313
      DUF707; Protein of unknown function (DUF707)

    8. NM_001331969.1 → NP_001321489.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5L5, A0A1P8AR16

    9. NM_001331970.1 → NP_001321490.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR15
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.