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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839293, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G01320
    Locus tag
    AT1G01320
    See related
    Araport:AT1G01320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F3.12; F6F3_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    25
    Sequence:
    Chromosome: 1; NC_003070.9 (121067..130577, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene uncharacterized protein Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene auxin-responsive endogenous peptide protein Neighboring gene cyclic nucleotide gated channel 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtFLL2, a member of the FLO2 gene family, affects the enlargement of leaves at the vegetative stage and facilitates the regulation of carbon metabolism and flow. Sato N, et al. Biosci Biotechnol Biochem, 2020 Dec. PMID 32897834
    2. REDUCED CHLOROPLAST COVERAGE genes from Arabidopsis thaliana help to establish the size of the chloroplast compartment. Larkin RM, et al. Proc Natl Acad Sci U S A, 2016 Feb 23. PMID 26862170, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100014.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloroplast localization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of glucose metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001184884.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1).
    NP_171639.3
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106; Bacteria - 3214; Metazoa - 4973; Fungi - 1823; Plants - 555; Viruses - 79; Other Eukaryotes - 1373 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      121067..130577 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197955.1 → NP_001184884.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184884.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9S1T5, F4HS98
      Conserved Domains (6) summary
      cd15466
      Location:700 → 844
      CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
      sd00006
      Location:916 → 942
      TPR; TPR repeat [structural motif]
      pfam13236
      Location:326 → 385
      CLU; Clustered mitochondria
      pfam13374
      Location:913 → 954
      TPR_10; Tetratricopeptide repeat
      pfam13424
      Location:910 → 983
      TPR_12; Tetratricopeptide repeat
      pfam15044
      Location:44 → 115
      CLU_N; Mitochondrial function, CLU-N-term

    2. NM_001331265.1 → NP_001321495.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W3B9, A0A1P8AR50

    3. NM_100014.8 → NP_171639.3  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171639.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HS99, Q8H2C0, Q9LNJ1
      UniProtKB/TrEMBL
      A0A178W3B9
      Conserved Domains (5) summary
      cd15466
      Location:700 → 844
      CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
      sd00006
      Location:924 → 950
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1005 → 1080
      TPR_12; Tetratricopeptide repeat
      pfam13236
      Location:326 → 385
      CLU; Clustered mitochondria
      pfam15044
      Location:45 → 115
      CLU_N; Mitochondrial function, CLU-N-term
    Nucleotide Protein
    Heading Accession and Version

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