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    zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822392, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
    Primary source
    TAIR:AT3G27700
    Locus tag
    AT3G27700
    See related
    Araport:AT3G27700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (10256895..10261975, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene photosystem II light harvesting complex protein 2.3 Neighboring gene RING/U-box superfamily protein Neighboring gene IBR domain containing protein Neighboring gene DNA helicase ROCK-N-ROLLERS

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113686.3
    NM_180677.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
    NP_189407.2
    • zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3790 Blast hits to 2562 proteins in 343 species: Archae - 8; Bacteria - 521; Metazoa - 625; Fungi - 291; Plants - 164; Viruses - 7; Other Eukaryotes - 2174 (source: NCBI BLink).
    NP_851008.1
    • zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3784 Blast hits to 2558 proteins in 341 species: Archae - 8; Bacteria - 515; Metazoa - 625; Fungi - 291; Plants - 164; Viruses - 7; Other Eukaryotes - 2174 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10256895..10261975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180677.2 → NP_851008.1  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851008.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMA1, Q8W4G4, Q9LVX1
      UniProtKB/TrEMBL
      A0A178VI11, A0A384KQQ5, A0A7G2ER93, C0SVD1
      Conserved Domains (5) summary
      smart00356
      Location:206 → 227
      ZnF_C3H1; zinc finger
      COG0724
      Location:365 → 493
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      PRK12704
      Location:587 → 644
      PRK12704; phosphodiesterase; Provisional
      cd12257
      Location:437 → 508
      RRM1_RBM26_like; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      cl17169
      Location:712 → 800
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_113686.3 → NP_189407.2  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189407.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMA1, Q8W4G4, Q9LVX1
      UniProtKB/TrEMBL
      A0A178VI11, A0A384KQQ5, A0A7G2ER93, C0SVD1
      Conserved Domains (5) summary
      smart00356
      Location:206 → 227
      ZnF_C3H1; zinc finger
      COG0724
      Location:365 → 493
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      PRK12704
      Location:587 → 644
      PRK12704; phosphodiesterase; Provisional
      cd12257
      Location:437 → 508
      RRM1_RBM26_like; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      cl17169
      Location:712 → 800
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVX1.1

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