XTH9 xyloglucan endotransglucosylase/hydrolase 9 [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Symbol: XTH9
Official Full Name: xyloglucan endotransglucosylase/hydrolase 9
Primary source: TAIR:AT4G03210
Locus tag: AT4G03210
See related: Araport:AT4G03210
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F4C21.14; F4C21_14; xyloglucan endotransglucosylase/hydrolase 9
Summary: encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See XTH9 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 4

Sequence:: Chromosome: 4; NC_003075.7 (1415617..1417444)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Study identified a nitrogen-responsive signaling module that comprises both xyloglucan endotransglucosylase 9 (XTH9) and the Dof transcription factor OBP4 and controls lateral root (LR) development in Arabidopsis. OBP4 bound to the promoter of XTH9 to suppress XTH9 expression to antagonistically control XTH9 expression. OBP4-XTH9 module elaborately sustains LR development in response to nitrate treatment.
Title: Nitrate-responsive OBP4-XTH9 regulatory module controls lateral root development in Arabidopsis thaliana.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Orthologs from OrthoDB

NM_001036504.1

Supported by ESTs:

NM_116559.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds	IEA Inferred from Electronic Annotation more info
enables polysaccharide binding	ISS Inferred from Sequence or Structural Similarity more info
enables xyloglucan:xyloglucosyl transferase activity	IEA Inferred from Electronic Annotation more info
enables xyloglucan:xyloglucosyl transferase activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Process	Evidence Code	Pubs
involved_in cell wall biogenesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within plant-type secondary cell wall biogenesis	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within xylem development	IGI Inferred from Genetic Interaction more info	PubMed
involved_in xyloglucan metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

Go to the top of the page Help

Preferred Names: xyloglucan endotransglucosylase/hydrolase 9

NP_001031581.1

xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_192230.1

xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

1415617..1417444

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_116559.3 → NP_192230.1 xyloglucan endotransglucosylase/hydrolase 9 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_192230.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LDW9, Q9ZR10

UniProtKB/TrEMBL

A0A178V222, A0A384KH19, A0A654FLJ2, C0SVH2

Conserved Domains (1) summary

cd02176
Location:25 → 284

GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
NM_001036504.1 → NP_001031581.1 xyloglucan endotransglucosylase/hydrolase 9 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001031581.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FLJ2, F4JI68

Conserved Domains (1) summary

cd02176
Location:15 → 256

GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16