U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    D6PKL1 D6 protein kinase like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828768, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    D6PKL1
    Official Full Name
    D6 protein kinase like 1
    Primary source
    TAIR:AT4G26610
    Locus tag
    AT4G26610
    See related
    Araport:AT4G26610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGC1-2; D6 protein kinase like 1; T15N24.60; T15N24_60
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See D6PKL1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (13424477..13427402)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene oligopeptide transporter 5 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Sucrase/ferredoxin-like family protein Neighboring gene DEK domain-containing chromatin associated protein Neighboring gene WRKY family transcription factor family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Roles of AGCVIII Kinases in the Hypocotyl Phototropism of Arabidopsis Seedlings. Haga K, et al. Plant Cell Physiol, 2018 May 1. PMID 29490064
    2. D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis. Willige BC, et al. Plant Cell, 2013 May. PMID 23709629, Free PMC Article
    3. Structural and functional insights into the regulation of Arabidopsis AGC VIIIa kinases. Zegzouti H, et al. J Biol Chem, 2006 Nov 17. PMID 16973627
    4. An IRE-like AGC kinase gene, MtIRE, has unique expression in the invasion zone of developing root nodules in Medicago truncatula. Pislariu CI, et al. Plant Physiol, 2007 Jun. PMID 17237187, Free PMC Article
    5. Growth signalling pathways in Arabidopsis and the AGC protein kinases. Bögre L, et al. Trends Plant Sci, 2003 Sep. PMID 13678909

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_118795.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in basipetal auxin transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within phototropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein phosphorylation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    D6 protein kinase like 1
    NP_194391.1
    • D6 protein kinase like 1 (D6PKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase (TAIR:AT5G55910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13424477..13427402
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118795.4 → NP_194391.1  D6 protein kinase like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194391.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WL51, Q9SUA3
      UniProtKB/TrEMBL
      A0A178V422, A0A5S9XWI0
      Conserved Domains (1) summary
      cd05574
      Location:122 → 477
      STKc_phototropin_like; Catalytic domain of Phototropin-like Serine/Threonine Kinases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUA3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools