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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830324, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT5G04460
    Locus tag
    AT5G04460
    See related
    Araport:AT5G04460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19N18.3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (1259435..1264025)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene binding to TOMV RNA 1L (long form) Neighboring gene RAP release 2, galactose-binding-like domain protein, putative (DUF1997) Neighboring gene uncharacterized protein Neighboring gene cyclin-dependent protein kinase inhibitor Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Myosin-driven transport network in plants. Kurth EG, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28096376, Free PMC Article
    2. Identification of Arabidopsis SUMO-interacting proteins that regulate chromatin activity and developmental transitions. Elrouby N, et al. Proc Natl Acad Sci U S A, 2013 Dec 3. PMID 24255109, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001203295.1
    NM_001203296.1
    NM_120528.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SUMO binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables myosin XI tail binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001190224.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1).
    NP_001190225.1
    • RING/U-box superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1).
    NP_001318480.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1); Has 3702 Blast hits to 3505 proteins in 331 species: Archae - 0; Bacteria - 182; Metazoa - 2128; Fungi - 130; Plants - 551; Viruses - 33; Other Eukaryotes - 678 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1259435..1264025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342774.1 → NP_001318480.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEL7, A0A5S9Y1X2, F4JWA1

    2. NM_001342775.1 → NP_001331156.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEL7, A0A5S9Y1X2, F4JWA1

    3. NM_001342776.1 → NP_001331157.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD10, Q9LZ79

    4. NM_001203296.1 → NP_001190225.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190225.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JWA3, Q9LZ79
      Conserved Domains (1) summary
      TIGR00844
      Location:141 → 294
      c_cpa1; na(+)/h(+) antiporter

    5. NM_001203295.1 → NP_001190224.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190224.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEL7, A0A5S9Y1X2, F4JWA1
      Conserved Domains (1) summary
      pfam13920
      Location:807 → 856
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    6. NM_120528.3 → NP_196066.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196066.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEL7, A0A5S9Y1X2, F4JWA1
      Conserved Domains (1) summary
      pfam13920
      Location:807 → 856
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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