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    Calcineurin-like metallo-phosphoesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830957, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcineurin-like metallo-phosphoesterase superfamily protein
    Primary source
    TAIR:AT5G10900
    Locus tag
    AT5G10900
    See related
    Araport:AT5G10900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30N20.170; T30N20_170
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (3435949..3439384, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene chorismate mutase 2 Neighboring gene tRNA synthetase-related / tRNA ligase-like protein Neighboring gene myosin heavy chain-like protein Neighboring gene mraW methylase family protein Neighboring gene L-Aspartase-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance. Xu D, et al. Plant Physiol, 2019 May. PMID 30760637, Free PMC Article
    2. PP7L is essential for MAIL1-mediated transposable element silencing and primary root growth. de Luxán-Hernández C, et al. Plant J, 2020 May. PMID 31849124
    3. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. Nicolau M, et al. PLoS Genet, 2020 Apr. PMID 32287271, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana
      Title: The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana.
    2. AT5G10900 (PP7L) is localized to the nucleus and the cytosol.PP7L is a positive regulator of photosynthesis at young developmental stages.PP7L is involved in the regulation of chloroplast gene expression.
      Title: Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001343142.1
    NM_121128.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within plastid translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Calcineurin-like metallo-phosphoesterase superfamily protein
    NP_196651.1
    • Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine phosphatase 7 (TAIR:AT5G63870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3435949..3439384 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343141.1 → NP_001331691.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEM8, A0A654G018

    2. NM_121128.4 → NP_196651.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196651.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LEV0
      UniProtKB/TrEMBL
      A0A178UDB8
      Conserved Domains (2) summary
      smart00156
      Location:191 → 500
      PP2Ac; Protein phosphatase 2A homologues, catalytic domain
      cl13995
      Location:157 → 507
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain

    3. NM_001343142.1 → NP_001331692.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEP8, A0A654G018
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LEV0.1

    Gene LinkOut

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