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    Rhomboid-related intramembrane serine protease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833839, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rhomboid-related intramembrane serine protease family protein
    Primary source
    TAIR:AT5G38510
    Locus tag
    AT5G38510
    See related
    Araport:AT5G38510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBB18.4; MBB18_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (15417636..15420638, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene B3 domain protein (DUF313) Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene tryptophan synthase beta type 2 Neighboring gene Mannose-binding lectin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085212.2
    NM_001344253.1
    NM_123212.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Rhomboid-related intramembrane serine protease family protein
    NP_001078681.1
    • Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 10 (TAIR:AT1G25290.2); Has 3625 Blast hits to 3625 proteins in 1267 species: Archae - 59; Bacteria - 2289; Metazoa - 237; Fungi - 114; Plants - 278; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).
    NP_198667.1
    • Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 10 (TAIR:AT1G25290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15417636..15420638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085212.2 → NP_001078681.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078681.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFX0
      UniProtKB/TrEMBL
      A0A178UMM7, A0A5S9Y916, A0A654G628
      Conserved Domains (1) summary
      pfam01694
      Location:225 → 367
      Rhomboid; Rhomboid family

    2. NM_123212.3 → NP_198667.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198667.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFX0
      UniProtKB/TrEMBL
      A0A178UMM7, A0A5S9Y916, A0A654G628
      Conserved Domains (1) summary
      pfam01694
      Location:225 → 367
      Rhomboid; Rhomboid family

    3. NM_001344253.1 → NP_001330612.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFX0
      UniProtKB/TrEMBL
      A0A178UMM7, A0A5S9Y916, A0A654G628
      Conserved Domains (1) summary
      pfam01694
      Location:225 → 367
      Rhomboid; Rhomboid family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFX0.1

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