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    TCH4 Xyloglucan endotransglucosylase/hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835860, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TCH4
    Official Full Name
    Xyloglucan endotransglucosylase/hydrolase family protein
    Primary source
    TAIR:AT5G57560
    Locus tag
    AT5G57560
    See related
    Araport:AT5G57560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUA2.13; MUA2_13; Touch 4; XTH22; xyloglucan endotransglucosylase/hydrolase 22; XYLOGLUCAN ENDOTRANSGLYCOSYLASE
    Summary
    Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli
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    Genomic context

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    See TCH4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (23307006..23308680, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 13 Neighboring gene xyloglucan endotransglucosylase/hydrolase 25 Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Xyloglucan Endotransglucosylase/Hydrolase Gene XTH22/TCH4 Regulates Plant Growth by Disrupting the Cell Wall Homeostasis in Arabidopsis under Boron Deficiency. Zhang C, et al. Int J Mol Sci, 2022 Jan 23. PMID 35163179, Free PMC Article
    2. [Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter]. Zhang CQ, et al. Yi Chuan, 2008 May. PMID 18487153
    3. Cellular localization of Arabidopsis xyloglucan endotransglycosylase-related proteins during development and after wind stimulation. Antosiewicz DM, et al. Plant Physiol, 1997 Dec. PMID 9414546, Free PMC Article
    4. Cold-shock regulation of the Arabidopsis TCH genes and the effects of modulating intracellular calcium levels. Polisensky DH, et al. Plant Physiol, 1996 Aug. PMID 8756505, Free PMC Article
    5. Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycosylase. Xu W, et al. Plant Cell, 1995 Oct. PMID 7580251, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Xyloglucan Endotransglucosylase/Hydrolase Gene XTH22/TCH4 Regulates Plant Growth by Disrupting the Cell Wall Homeostasis in Arabidopsis under Boron Deficiency.
      Title: The Xyloglucan Endotransglucosylase/Hydrolase Gene XTH22/TCH4 Regulates Plant Growth by Disrupting the Cell Wall Homeostasis in Arabidopsis under Boron Deficiency.
    2. identified 9 transcriptional regulatory elements from TCH4 promoter by bioinformatics approach
      Title: [Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter].
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125137.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within plant-type cell wall organization TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to brassinosteroid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to mechanical stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    Xyloglucan endotransglucosylase/hydrolase family protein
    NP_200564.1
    • Touch 4 (TCH4); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 2219 Blast hits to 2201 proteins in 305 species: Archae - 0; Bacteria - 284; Metazoa - 0; Fungi - 458; Plants - 1386; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23307006..23308680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125137.4 → NP_200564.1  Xyloglucan endotransglucosylase/hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200564.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38857, Q8H783
      UniProtKB/TrEMBL
      A0A178UQX4, A0A5S9YEY1
      Conserved Domains (1) summary
      cd02176
      Location:19 → 281
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38857.1

    Gene LinkOut

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