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    RALFL34 ralf-like 34 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836842, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RALFL34
    Official Full Name
    ralf-like 34
    Primary source
    TAIR:AT5G67070
    Locus tag
    AT5G67070
    See related
    Araport:AT5G67070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K21H1.3; K21H1_3; ralf-like 34
    Summary
    Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
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    Genomic context

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    See RALFL34 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (26767599..26768956)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene mitogen-activated protein kinase kinase kinase 19 Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene DNA-directed DNA polymerase Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation. Murphy E, et al. J Exp Bot, 2016 Aug. PMID 27521602, Free PMC Article
    2. Receptor Kinase THESEUS1 Is a Rapid Alkalinization Factor 34 Receptor in Arabidopsis. Gonneau M, et al. Curr Biol, 2018 Aug 6. PMID 30057301
    3. The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators. Nikonorova N, et al. Cells, 2021 Jul 2. PMID 34359847, Free PMC Article
    4. Arabidopsis pollen tube integrity and sperm release are regulated by RALF-mediated signaling. Ge Z, et al. Science, 2017 Dec 22. PMID 29242234, Free PMC Article
    5. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. Olsen AN, et al. In Silico Biol, 2002. PMID 12611624

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators.
      Title: The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators.
    2. Together, the results show that RALF34 and THE1 are part of a signaling network that integrates information on the integrity of the cell wall with the coordination of normal morphogenesis.
      Title: Receptor Kinase THESEUS1 Is a Rapid Alkalinization Factor 34 Receptor in Arabidopsis.
    3. This paper describes the role of the peptide RALFL34 during early events in lateral root development, and demonstrate its specific importance in orchestrating formative cell divisions in the pericycle.
      Title: RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_126107.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hormone activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-mediated signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cell-cell signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ralf-like 34
    NP_201508.1
    • ralf-like 34 (RALFL34); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26767599..26768956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126107.4 → NP_201508.1  ralf-like 34 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201508.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9S6, Q9FHA6
      UniProtKB/TrEMBL
      A0A178UD98, A0A5S9YHP1
      Conserved Domains (1) summary
      pfam05498
      Location:62 → 129
      RALF; Rapid ALkalinization Factor (RALF)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FHA6.1

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