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    ATL9 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818064, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATL9
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT2G35000
    Locus tag
    AT2G35000
    See related
    Araport:AT2G35000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis toxicos en levadura 9; F19I3.23; F19I3_23
    Summary
    E3 ligase-like protein induced by chitin oligomers.
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    Genomic context

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    See ATL9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (14751541..14753319, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Thr Neighboring gene RING/U-box superfamily protein Neighboring gene thioredoxin O1 Neighboring gene N-acetylglucosamine-1-phosphate uridylyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression and regulation of ATL9, an E3 ubiquitin ligase involved in plant defense. Deng F, et al. PLoS One, 2017. PMID 29161311, Free PMC Article
    2. ATL9, a RING zinc finger protein with E3 ubiquitin ligase activity implicated in chitin- and NADPH oxidase-mediated defense responses. Berrocal-Lobo M, et al. PLoS One, 2010 Dec 23. PMID 21203445, Free PMC Article
    3. Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum. Ramonell K, et al. Plant Physiol, 2005 Jun. PMID 15923325, Free PMC Article
    4. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Stone SL, et al. Plant Physiol, 2005 Jan. PMID 15644464, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129052.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to chitin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_181045.1
    • RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: defense response to fungus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G35330.1); Has 9249 Blast hits to 9225 proteins in 281 species: Archae - 0; Bacteria - 6; Metazoa - 2393; Fungi - 760; Plants - 4794; Viruses - 39; Other Eukaryotes - 1257 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14751541..14753319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129052.3 → NP_181045.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181045.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64763, Q4TU26
      UniProtKB/TrEMBL
      A0A178VUE1, A0A654EYX1
      Conserved Domains (2) summary
      COG5243
      Location:98 → 243
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd16454
      Location:134 → 177
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64763.1

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