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    pre-mRNA splicing factor domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819028, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pre-mRNA splicing factor domain-containing protein
    Primary source
    TAIR:AT2G44200
    Locus tag
    AT2G44200
    See related
    Araport:AT2G44200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I1.1; F4I1_1
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (18276152..18278627)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ENDOSPERM DEFECTIVE protein (DUF566) Neighboring gene pre-mRNA splicing factor domain-containing protein Neighboring gene uncharacterized protein Neighboring gene carboxyl-terminal peptidase (DUF239) Neighboring gene NEP-interacting protein (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis MAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing. Sánchez-García AB, et al. Plant Cell, 2015 Jul. PMID 26139346, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129984.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA splicing factor domain-containing protein
    NP_566014.1
    • CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor; CONTAINS InterPro DOMAIN/s: CBF1-interacting co-repressor CIR, N-terminal (InterPro:IPR019339), Pre-mRNA splicing factor (InterPro:IPR022209); BEST Arabidopsis thaliana protein match is: CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (TAIR:AT2G44195.1); Has 59661 Blast hits to 33745 proteins in 1751 species: Archae - 130; Bacteria - 4372; Metazoa - 27826; Fungi - 6422; Plants - 3866; Viruses - 275; Other Eukaryotes - 16770 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18276152..18278627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129984.3 → NP_566014.1  pre-mRNA splicing factor domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566014.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X6V1, A0A654F1U4, O64855
      Conserved Domains (3) summary
      PHA02896
      Location:238 → 465
      PHA02896; A-type inclusion like protein; Provisional
      pfam10197
      Location:11 → 46
      Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
      pfam12542
      Location:65 → 155
      CWC25; Pre-mRNA splicing factor
    Nucleotide Protein
    Heading Accession and Version

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