U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ASHH3 histone-lysine N-methyltransferase ASHH3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819021, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ASHH3
    Official Full Name
    histone-lysine N-methyltransferase ASHH3
    Primary source
    TAIR:AT2G44150
    Locus tag
    AT2G44150
    See related
    Araport:AT2G44150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6E13.28; histone-lysine N-methyltransferase ASHH3; SDG7; SET DOMAIN-CONTAINING PROTEIN 7
    Summary
    Encodes a protein-lysine N-methyltransferase. Located in ER.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ASHH3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (18258569..18261542)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L30/L7 family protein Neighboring gene Peptidase family C54 protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene methylenetetrahydrofolate reductase 2 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. O-carboxyl- and N-methyltransferases active on plant aquaporins. Sahr T, et al. Plant Cell Physiol, 2010 Dec. PMID 21062871
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_129978.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein-lysine N-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    histone-lysine N-methyltransferase ASHH3
    NP_566010.1
    • histone-lysine N-methyltransferase ASHH3 (ASHH3); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ASHH4 (TAIR:AT3G59960.1); Has 5334 Blast hits to 5316 proteins in 470 species: Archae - 2; Bacteria - 417; Metazoa - 2223; Fungi - 539; Plants - 1028; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18258569..18261542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129978.4 → NP_566010.1  histone-lysine N-methyltransferase ASHH3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566010.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80584, Q945S8, Q94AQ1
      UniProtKB/TrEMBL
      A0A178VNH9, A0A5S9X6U4
      Conserved Domains (2) summary
      cd19175
      Location:117 → 255
      SET_ASHR3-like; SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins
      cd20404
      Location:313 → 362
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q945S8.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools