U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    APD1 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818397, updated on 18-Sep-2024

    Summary

    Official Symbol
    APD1
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT2G38185
    Locus tag
    AT2G38185
    See related
    Araport:AT2G38185
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABERRANT POLLEN DEVELOPMENT 1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See APD1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (15999926..16003169)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene putative PDX1-like protein 4 Neighboring gene RING/U-box superfamily protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_129375.3
    NM_201902.4
    NM_201903.2
    NM_201904.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in endosome PubMed 
    located_in nucleus  
    located_in plant-type vacuole membrane PubMed 

    General protein information

    Preferred Names
    RING/U-box superfamily protein
    NP_565884.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973631.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973632.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38195.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973633.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15999926..16003169
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201902.4 → NP_973631.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973631.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IS11, Q0WS06, Q8S8T1
      UniProtKB/TrEMBL
      A0A5S9X5J7, A0A654EZW6
      Conserved Domains (3) summary
      pfam13920
      Location:386 → 431
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      pfam16040
      Location:121 → 187
      DUF4792; Domain of unknown function (DUF4792)
      pfam16041
      Location:213 → 321
      DUF4793; Domain of unknown function (DUF4793)
    2. NM_201903.2 → NP_973632.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973632.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IS11
      Conserved Domains (3) summary
      pfam13920
      Location:291 → 340
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      pfam16040
      Location:63 → 92
      DUF4792; Domain of unknown function (DUF4792)
      pfam16041
      Location:122 → 225
      DUF4793; Domain of unknown function (DUF4793)
    3. NM_201904.2 → NP_973633.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973633.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X5J7, F4IS08
      Conserved Domains (3) summary
      pfam13920
      Location:392 → 441
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      pfam16040
      Location:120 → 187
      DUF4792; Domain of unknown function (DUF4792)
      pfam16041
      Location:217 → 326
      DUF4793; Domain of unknown function (DUF4793)
    4. NM_129375.3 → NP_565884.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565884.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IS11, Q0WS06, Q8S8T1
      UniProtKB/TrEMBL
      A0A5S9X5J7, A0A654EZW6
      Conserved Domains (3) summary
      pfam13920
      Location:386 → 431
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      pfam16040
      Location:121 → 187
      DUF4792; Domain of unknown function (DUF4792)
      pfam16041
      Location:213 → 321
      DUF4793; Domain of unknown function (DUF4793)
    External link. Please review our privacy policy.