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    ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817984, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629)
    Primary source
    TAIR:AT2G34230
    Locus tag
    AT2G34230
    See related
    Araport:AT2G34230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13P17.7; F13P17_7
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (14454521..14457213)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ubiquitin carboxyl-terminal hydrolase-like protein, putative (Protein with domains of unknown function DUF627 and DUF632)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001124968.2
    NM_128974.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629)
    NP_001118440.1
    • Protein with domains of unknown function (DUF627 and DUF629); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF627 and DUF629) (TAIR:AT2G34220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_180970.1
    • Protein with domains of unknown function (DUF627 and DUF629); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF627 and DUF629) (TAIR:AT2G34220.1); Has 93 Blast hits to 93 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14454521..14457213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124968.2 → NP_001118440.1  ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118440.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZQ6, B3H4B1
      Conserved Domains (2) summary
      pfam04780
      Location:193 → 650
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:23 → 139
      DUF627; Protein of unknown function (DUF627)

    2. NM_128974.2 → NP_180970.1  ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180970.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZQ6, O80772
      Conserved Domains (2) summary
      pfam04780
      Location:193 → 650
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:23 → 139
      DUF627; Protein of unknown function (DUF627)
    Nucleotide Protein
    Heading Accession and Version

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