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    zinc finger C3H1 domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818543, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger C3H1 domain protein
    Primary source
    TAIR:AT2G39580
    Locus tag
    AT2G39580
    See related
    Araport:AT2G39580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12L6.24; F12L6_24
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (16510273..16517200)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Putative membrane lipoprotein Neighboring gene ACT domain-containing protein Neighboring gene 40S ribosomal protein S15a Neighboring gene tRNA-Cys

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129516.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger C3H1 domain protein
    NP_181490.5
    • CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16510273..16517200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336782.1 → NP_001324606.1  zinc finger C3H1 domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0L2, A0A5S9X5G7

    2. NM_129516.5 → NP_181490.5  zinc finger C3H1 domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181490.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FAV8, F4IVX7
      Conserved Domains (2) summary
      pfam10650
      Location:809 → 827
      zf-C3H1; Putative zinc-finger domain
      pfam15796
      Location:428 → 480
      KELK; KELK-motif containing domain of MRCK Ser/Thr protein kinase
    Nucleotide Protein
    Heading Accession and Version

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