ELF3 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ELF3
Official Full Name: hydroxyproline-rich glycoprotein family protein
Primary source: TAIR:AT2G25930
Locus tag: AT2G25930
See related: Araport:AT2G25930
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: EARLY FLOWERING 3; F17H15.25; PYK20
Summary: Encodes a nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway. Required component of the core circadian clock regardless of light conditions.
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Genomic context

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See ELF3 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 4

Sequence:: Chromosome: 2; NC_003071.7 (11058944..11063324)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The AGL6-ELF3-FT circuit controls flowering time in Arabidopsis.
Title: The AGL6-ELF3-FT circuit controls flowering time in Arabidopsis.
Revisiting the role and mechanism of ELF3 in circadian clock modulation.
Title: Revisiting the role and mechanism of ELF3 in circadian clock modulation.
Complex epistatic interactions between ELF3, PRR9, and PRR7 regulate the circadian clock and plant physiology.
Title: Complex epistatic interactions between ELF3, PRR9, and PRR7 regulate the circadian clock and plant physiology.
Phase separation and molecular ordering of the prion-like domain of the Arabidopsis thermosensory protein EARLY FLOWERING 3.
Title: Phase separation and molecular ordering of the prion-like domain of the Arabidopsis thermosensory protein EARLY FLOWERING 3.
EARLY FLOWERING3 sub-nuclear localization responds to changes in ambient temperature.
Title: EARLY FLOWERING3 sub-nuclear localization responds to changes in ambient temperature.
Molecular and functional dissection of EARLY-FLOWERING 3 (ELF3) and ELF4 in Arabidopsis.
Title: Molecular and functional dissection of EARLY-FLOWERING 3 (ELF3) and ELF4 in Arabidopsis.
Photoperiod sensing of the circadian clock is controlled by EARLY FLOWERING 3 and GIGANTEA.
Title: Photoperiod sensing of the circadian clock is controlled by EARLY FLOWERING 3 and GIGANTEA.
A prion-like domain in ELF3 functions as a thermosensor in Arabidopsis.
Title: A prion-like domain in ELF3 functions as a thermosensor in Arabidopsis.
HDA9 specifically binds to the TOC1 promoter through the interaction with ELF3. The EC-HDA9 complex promotes H3 deacetylation at the TOC1 locus, contributing to suppressing TOC1 expression during the night.
Title: The EC-HDA9 complex rhythmically regulates histone acetylation at the TOC1 promoter in Arabidopsis.
BBX18 and BBX23 interact with ELF3 or COP1.
Title: Two B-Box Domain Proteins, BBX18 and BBX23, Interact with ELF3 and Regulate Thermomorphogenesis in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_128153.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within circadian rhythm	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within circumnutation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within entrainment of circadian clock	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within photoperiodism, flowering	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within red, far-red light phototransduction	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of flower development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of photoperiodism, flowering	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of stomatal movement	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to abscisic acid	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to auxin	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to cold	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within unidimensional cell growth	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: hydroxyproline-rich glycoprotein family protein

NP_180164.1

EARLY FLOWERING 3 (ELF3); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21320.1); Has 3878 Blast hits to 3344 proteins in 292 species: Archae - 0; Bacteria - 125; Metazoa - 1474; Fungi - 865; Plants - 343; Viruses - 16; Other Eukaryotes - 1055 (source: NCBI BLink).