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    ASY3 asynaptic protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819312, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ASY3
    Official Full Name
    asynaptic protein
    Primary source
    TAIR:AT2G46980
    Locus tag
    AT2G46980
    See related
    Araport:AT2G46980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana ASYNAPTIC 3; ASYNAPTIC 3; AtASY3; F14M4.19
    Summary
    Encodes ASY3, a coiled-coil domain protein that is required for normal meiosis.
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    Genomic context

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    See ASY3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (19299492..19304271, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 709, subfamily B, polypeptide 1 Neighboring gene phytochrome interacting factor 3-like 1 Neighboring gene ncRNA Neighboring gene indole-3-acetic acid inducible 20 Neighboring gene uncharacterized protein Neighboring gene ATP binding cassette subfamily B4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Inter-homolog crossing-over and synapsis in Arabidopsis meiosis are dependent on the chromosome axis protein AtASY3. Ferdous M, et al. PLoS Genet, 2012 Feb. PMID 22319460, Free PMC Article
    2. The Arabidopsis Cdk1/Cdk2 homolog CDKA;1 controls chromosome axis assembly during plant meiosis. Yang C, et al. EMBO J, 2020 Feb 3. PMID 31556459, Free PMC Article
    3. A conserved filamentous assembly underlies the structure of the meiotic chromosome axis. West AM, et al. Elife, 2019 Jan 18. PMID 30657449, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202836.1
    NM_130266.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within meiotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of synaptonemal complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chromosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    asynaptic protein
    NP_001189765.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.
    NP_182221.1
    • unknown protein; Has 1165 Blast hits to 947 proteins in 158 species: Archae - 0; Bacteria - 33; Metazoa - 631; Fungi - 90; Plants - 54; Viruses - 14; Other Eukaryotes - 343 (source: NCBI BLink).
    NP_850466.2
    • unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19299492..19304271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180135.3 → NP_850466.2  asynaptic protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850466.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80726, Q0WR66, Q8RY31
      UniProtKB/TrEMBL
      A0A178VTH8, A0A7G2EHY4

    2. NM_001337230.1 → NP_001324485.1  asynaptic protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0A5, A0A5S9X7Q5

    3. NM_001337229.1 → NP_001324484.1  asynaptic protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0A4, A0A5S9X7Q5

    4. NM_001337228.1 → NP_001324483.1  asynaptic protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B080, A0A5S9X7Q5

    5. NM_001202836.1 → NP_001189765.1  asynaptic protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189765.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTH8, F4IK49

    6. NM_130266.2 → NP_182221.1  asynaptic protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182221.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WR66
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WR66.1

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