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    IAA20 indole-3-acetic acid inducible 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819313, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IAA20
    Official Full Name
    indole-3-acetic acid inducible 20
    Primary source
    TAIR:AT2G46990
    Locus tag
    AT2G46990
    See related
    Araport:AT2G46990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M4.18; indole-3-acetic acid inducible 20
    Summary
    Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.
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    Genomic context

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    See IAA20 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (19307714..19309071)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phytochrome interacting factor 3-like 1 Neighboring gene asynaptic protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ATP binding cassette subfamily B4 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Dreher KA, et al. Plant Cell, 2006 Mar. PMID 16489122, Free PMC Article
    2. Overexpression of the non-canonical Aux/IAA genes causes auxin-related aberrant phenotypes in Arabidopsis. Sato A, et al. Physiol Plant, 2008 Jun. PMID 18298415
    3. Protein-protein interactions among the Aux/IAA proteins. Kim J, et al. Proc Natl Acad Sci U S A, 1997 Oct 28. PMID 9342315, Free PMC Article
    4. Genetics of Aux/IAA and ARF action in plant growth and development. Liscum E, et al. Plant Mol Biol, 2002 Jun-Jul. PMID 12036262
    5. Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis. Piya S, et al. Front Plant Sci, 2014. PMID 25566309, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130267.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cotyledon vascular tissue pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within skotomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indole-3-acetic acid inducible 20
    NP_182222.1
    • indole-3-acetic acid inducible 20 (IAA20); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 30 (TAIR:AT3G62100.1); Has 1768 Blast hits to 1768 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1767; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19307714..19309071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337231.1 → NP_001325417.1  indole-3-acetic acid inducible 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3K0J5, E1A7R2, E1A7R4, E1A7R8

    2. NM_130267.6 → NP_182222.1  indole-3-acetic acid inducible 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182222.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O24410
      UniProtKB/TrEMBL
      A0A178W181, A0A5S9X7M7, E1A7R5
      Conserved Domains (1) summary
      pfam02309
      Location:86 → 168
      AUX_IAA; AUX/IAA family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24410.2

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