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    TIP4;1 tonoplast intrinsic protein 4;1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817123, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TIP4;1
    Official Full Name
    tonoplast intrinsic protein 4;1
    Primary source
    TAIR:AT2G25810
    Locus tag
    AT2G25810
    See related
    Araport:AT2G25810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17H15.16; F17H15_16; tonoplast intrinsic protein 4;1
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    Genomic context

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    See TIP4;1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (11012499..11014171)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Leucine-rich receptor-like protein kinase family protein Neighboring gene elongation factor Ts (DUF810) Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene YebC-like protein Neighboring gene Nucleotidylyl transferase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In vivo imaging of the tonoplast intrinsic protein family in Arabidopsis roots. Gattolin S, et al. BMC Plant Biol, 2009 Nov 18. PMID 19922653, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128141.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables water channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in central vacuole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tonoplast intrinsic protein 4;1
    NP_180152.1
    • tonoplast intrinsic protein 4;1 (TIP4;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, membrane, central vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10430 Blast hits to 10407 proteins in 2161 species: Archae - 84; Bacteria - 4945; Metazoa - 1471; Fungi - 406; Plants - 2499; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11012499..11014171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128141.6 → NP_180152.1  tonoplast intrinsic protein 4;1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180152.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82316, Q53XD1
      UniProtKB/TrEMBL
      A0A178VQH3, A0A5S9X1I1, A0A7G2E927
      Conserved Domains (1) summary
      cl00200
      Location:1 → 234
      MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82316.1

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