U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    scpl22 serine carboxypeptidase-like 22 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816934, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    scpl22
    Official Full Name
    serine carboxypeptidase-like 22
    Primary source
    TAIR:AT2G24000
    Locus tag
    AT2G24000
    See related
    Araport:AT2G24000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    serine carboxypeptidase-like 22; T29E15.20; T29E15_20
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See scpl22 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (10209421..10214042)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated channel 6 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene early nodulin-like protein 11 Neighboring gene serine carboxypeptidase-like 23 Neighboring gene Putative BCR, YbaB family COG0718 Neighboring gene zinc ion binding / nucleic acid binding protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    serine carboxypeptidase-like 22
    NP_001077950.1
    • serine carboxypeptidase-like 22 (scpl22); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G30610.1); Has 3944 Blast hits to 3014 proteins in 261 species: Archae - 0; Bacteria - 12; Metazoa - 725; Fungi - 882; Plants - 1918; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).
    NP_179978.2
    • serine carboxypeptidase-like 22 (scpl22); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G30610.1); Has 3601 Blast hits to 3537 proteins in 344 species: Archae - 0; Bacteria - 138; Metazoa - 640; Fungi - 882; Plants - 1458; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10209421..10214042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127962.3 → NP_179978.2  serine carboxypeptidase-like 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179978.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82228, Q1PF08, Q1PF09
      UniProtKB/TrEMBL
      A0A5S9X0L5, A6XH04
      Conserved Domains (1) summary
      pfam00450
      Location:35 → 457
      Peptidase_S10; Serine carboxypeptidase

    2. NM_001084481.1 → NP_001077950.1  serine carboxypeptidase-like 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077950.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0L5
      Conserved Domains (1) summary
      pfam00450
      Location:35 → 394
      Peptidase_S10; Serine carboxypeptidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PF08.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.