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    DEG2 DEGP protease 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819406, updated on 18-Sep-2024

    Summary

    Official Symbol
    DEG2
    Official Full Name
    DEGP protease 2
    Primary source
    TAIR:AT2G47940
    Locus tag
    AT2G47940
    See related
    Araport:AT2G47940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DEGP protease 2; DEGP2; degradation of periplasmic proteins 2; EMB3117; EMBRYO DEFECTIVE 3117
    Summary
    Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
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    Genomic context

    See DEG2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    19
    Sequence:
    Chromosome: 2; NC_003071.7 (19617986..19622301, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene uncharacterized protein Neighboring gene arabinogalactan protein 26 Neighboring gene miscRNA Neighboring gene myelin transcription factor-like protein Neighboring gene trafficking protein particle complex subunit-like protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General protein information

    Preferred Names
    DEGP protease 2
    NP_001118544.1
    • DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_566115.1
    • DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19617986..19622301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130361.5NP_566115.1  DEGP protease 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566115.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82261, Q9FPE9
      UniProtKB/TrEMBL
      A0A178VUR8, A0A5S9X8G7
      Conserved Domains (2) summary
      TIGR02037
      Location:135458
      degP_htrA_DO; periplasmic serine protease, Do/DeqQ family
      pfam17815
      Location:429570
      PDZ_3; PDZ domain
    2. NM_001125072.1NP_001118544.1  DEGP protease 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118544.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H581
      Conserved Domains (3) summary
      cd00987
      Location:320419
      PDZ_serine_protease; PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind ...
      pfam00089
      Location:123307
      Trypsin; Trypsin
      pfam13365
      Location:143281
      Trypsin_2; Trypsin-like peptidase domain