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    XBAT31 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817433, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XBAT31
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT2G28840
    Locus tag
    AT2G28840
    See related
    Araport:AT2G28840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8N16.13; F8N16_13; XB3 ortholog 1 in Arabidopsis thaliana
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    Genomic context

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    See XBAT31 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (12378272..12380809)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L16 Neighboring gene armadillo/beta-catenin repeat protein Neighboring gene cytochrome P450, family 710, subfamily A, polypeptide 3 Neighboring gene cytochrome P450, family 710, subfamily A, polypeptide 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. XBAT31 regulates thermoresponsive hypocotyl growth through mediating degradation of the thermosensor ELF3 in Arabidopsis. Zhang LL, et al. Sci Adv, 2021 May. PMID 33962946, Free PMC Article
    2. XBAT31 regulates reproductive thermotolerance through controlling the accumulation of HSFB2a/B2b under heat stress conditions. Zhang LL, et al. Cell Rep, 2024 Jun 25. PMID 38870009
    3. The C-terminal region (640-967) of Arabidopsis CPL1 interacts with the abiotic stress- and ABA-responsive transcription factors. Bang WY, et al. Biochem Biophys Res Commun, 2008 Aug 8. PMID 18541146
    4. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. XBAT31 regulates reproductive thermotolerance through controlling the accumulation of HSFB2a/B2b under heat stress conditions.
      Title: XBAT31 regulates reproductive thermotolerance through controlling the accumulation of HSFB2a/B2b under heat stress conditions.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001124934.1
    NM_128443.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001118406.1
    • XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_180450.2
    • XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12378272..12380809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128443.4 → NP_180450.2  uncharacterized protein AT2G28840 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180450.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56W24, Q944L4, Q94B55, Q9ZV30
      UniProtKB/TrEMBL
      A0A178VZ27, A0A5S9X2F1
      Conserved Domains (4) summary
      COG0666
      Location:149 → 292
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:78 → 109
      ANK; ANK repeat [structural motif]
      cd16516
      Location:318 → 368
      RING-HC_malin; RING finger, HC subclass, found in malin and similar proteins
      pfam12796
      Location:83 → 181
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001124934.1 → NP_001118406.1  uncharacterized protein AT2G28840 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118406.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X2F1, F4IJM9
      Conserved Domains (5) summary
      cd00204
      Location:59 → 201
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:103 → 211
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:67 → 119
      Ank_4; Ankyrin repeats (many copies)
      pfam13920
      Location:303 → 357
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      sd00045
      Location:64 → 98
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94B55.1

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