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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818253, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT2G36810
    Locus tag
    AT2G36810
    See related
    Araport:AT2G36810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13K3.21; F13K3_21; SGR6; SHOOT GRAVITROPISM 6
    Summary
    Specifically involved in gravity perception and/or gravity signal transduction for the shoot gravitropic response. Effects gravitropism only in inflorescence stems but normal in both hypocotyls and roots.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    51
    Sequence:
    Chromosome: 2; NC_003071.7 (15425321..15439642, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene UDP-glucosyl transferase 73C6 Neighboring gene don-glucosyltransferase 1 Neighboring gene mid region of cactin Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A unique HEAT repeat-containing protein SHOOT GRAVITROPISM6 is involved in vacuolar membrane dynamics in gravity-sensing cells of Arabidopsis inflorescence stem. Hashiguchi Y, et al. Plant Cell Physiol, 2014 Apr. PMID 24486761, Free PMC Article
    2. Mutations in the SGR4, SGR5 and SGR6 loci of Arabidopsis thaliana alter the shoot gravitropism. Yamauchi Y, et al. Plant Cell Physiol, 1997 May. PMID 9210330
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SGR6 is a novel protein involved in the formation and/or maintenance of invaginated vacuolar membrane structures in gravity-sensing cells.[SGR6] [SHOOT GRAVITROPISM6]
      Title: A unique HEAT repeat-containing protein SHOOT GRAVITROPISM6 is involved in vacuolar membrane dynamics in gravity-sensing cells of Arabidopsis inflorescence stem.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129236.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in amyloplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    NOT involved_in positive gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_181219.4
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 392 Blast hits to 295 proteins in 82 species: Archae - 0; Bacteria - 2; Metazoa - 305; Fungi - 6; Plants - 46; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15425321..15439642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336609.1 → NP_001325040.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W090, A0A1P8B1Z0, A0A384LIW2, A0A7G2EBU3
      Conserved Domains (1) summary
      sd00044
      Location:1404 → 1432
      HEAT; HEAT repeat [structural motif]

    2. NM_001336610.1 → NP_001325039.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1Y3, A0A7G2EBU3

    3. NM_129236.4 → NP_181219.4  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181219.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IP13, Q8GUF9, Q9ZQ92, Q9ZQ93
      UniProtKB/TrEMBL
      A0A7G2EBU3
      Conserved Domains (1) summary
      sd00044
      Location:1417 → 1445
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IP13.1

    Gene LinkOut

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