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    RPL3B R-protein L3 B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842454, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL3B
    Official Full Name
    R-protein L3 B
    Primary source
    TAIR:AT1G61580
    Locus tag
    AT1G61580
    See related
    Araport:AT1G61580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS RIBOSOMAL PROTEIN 2; ARP2; R-protein L3 B; RIBOSOMAL PROTEIN L3; T25B24.7; T25B24_7
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    Genomic context

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    See RPL3B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (22720560..22723152, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ralf-like 9 Neighboring gene translocase of the inner mitochondrial membrane 13 Neighboring gene Serine/Threonine kinase; kinase; ATP-binding; sugar-binding; kinase; carbohydrate-binding protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two evolutionarily divergent genes encode a cytoplasmic ribosomal protein of Arabidopsis thaliana. Kim Y, et al. Gene, 1990 Sep 14. PMID 2227432
    2. Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Siodmak A, et al. Nucleic Acids Res, 2023 Nov 27. PMID 37823590, Free PMC Article
    3. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104840.5

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in defense response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 
    part_of cytosolic large ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    R-protein L3 B
    NP_176352.1
    • R-protein L3 B (RPL3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein 1 (TAIR:AT1G43170.8); Has 2774 Blast hits to 2767 proteins in 966 species: Archae - 329; Bacteria - 1185; Metazoa - 455; Fungi - 168; Plants - 207; Viruses - 1; Other Eukaryotes - 429 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22720560..22723152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104840.5 → NP_176352.1  R-protein L3 B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176352.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P22738, Q9SY92
      UniProtKB/TrEMBL
      A0A7G2E3C6
      Conserved Domains (2) summary
      PTZ00103
      Location:1 → 386
      PTZ00103; 60S ribosomal protein L3; Provisional
      cl00324
      Location:3 → 343
      RplC; Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P22738.4

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