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    COBL6 COBRA-like protein 6 precursor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837508, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COBL6
    Official Full Name
    COBRA-like protein 6 precursor
    Primary source
    TAIR:AT1G09790
    Locus tag
    AT1G09790
    See related
    Araport:AT1G09790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COBRA-like protein 6 precursor; F21M12.17; F21M12_17
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    Genomic context

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    See COBL6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (3168434..3171018, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene U2 small nuclear ribonucleoprotein A Neighboring gene cell division cycle 5 Neighboring gene Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent Neighboring gene Cox19 family protein (CHCH motif) Neighboring gene ATP phosphoribosyl transferase 2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Roudier F, et al. Plant Physiol, 2002 Oct. PMID 12376623, Free PMC Article
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100851.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellulose microfibril organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    COBRA-like protein 6 precursor
    NP_172450.2
    • COBRA-like protein 6 precursor (COBL6); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 376 Blast hits to 369 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 376; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3168434..3171018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331851.1 → NP_001322459.1  COBRA-like protein 6 precursor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU31, A0A5S9TIZ5

    2. NM_100851.2 → NP_172450.2  COBRA-like protein 6 precursor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172450.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04500
      UniProtKB/TrEMBL
      A0A5S9TIZ5
      Conserved Domains (1) summary
      pfam04833
      Location:61 → 222
      COBRA; COBRA-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04500.2

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