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    SIP1 seed imbibition 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842023, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SIP1
    Official Full Name
    seed imbibition 1
    Primary source
    TAIR:AT1G55740
    Locus tag
    AT1G55740
    See related
    Araport:AT1G55740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSIP1; F20N2.14; raffinose synthase 1; RS1; seed imbibition 1
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    Genomic context

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    See SIP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (20835256..20838778, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vacuolar cation/proton exchanger Neighboring gene cation exchanger 5 Neighboring gene BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) Neighboring gene uncharacterized protein Neighboring gene BTB/POZ domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104450.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables galactinol-sucrose galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    seed imbibition 1
    NP_175970.1
    • seed imbibition 1 (SIP1); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1); Has 563 Blast hits to 527 proteins in 159 species: Archae - 29; Bacteria - 119; Metazoa - 0; Fungi - 82; Plants - 322; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20835256..20838778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104450.4 → NP_175970.1  seed imbibition 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175970.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84VX0
      UniProtKB/TrEMBL
      A0A178WFT8
      Conserved Domains (1) summary
      PLN02355
      Location:1 → 754
      PLN02355; probable galactinol--sucrose galactosyltransferase 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84VX0.1

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