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    RAX2 Duplicated homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818262, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RAX2
    Official Full Name
    Duplicated homeodomain-like superfamily protein
    Primary source
    TAIR:AT2G36890
    Locus tag
    AT2G36890
    See related
    Araport:AT2G36890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYB38; BIT1; BLUE INSENSITIVE TRAIT 1; MYB DOMAIN PROTEIN 38; MYB38; REGULATOR OF AXILLARY MERISTEMS 2; T1J8.7; T1J8_7
    Summary
    ''Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. ''
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    Genomic context

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    See RAX2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (15485619..15487451)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene methionine adenosyltransferase 3 Neighboring gene translation initiation factor Neighboring gene D-tagatose-1,6-bisphosphate aldolase subunit Neighboring gene membrin 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis. Hong SH, et al. Plant J, 2008 Aug. PMID 18397371
    2. Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis. Müller D, et al. Plant Cell, 2006 Mar. PMID 16461581, Free PMC Article
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The MYB transcription factor Blue Insensitive Trait 1 (BIT1) functions as a positive element in blue light signaling. [BIT1]
      Title: CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis.
    2. rax mutants show new phenotypes that are characterized by defects in lateral bud formation in overlapping zones along the shoot axis. RAX genes are partially redundant in function and allow a fine-tuning of secondary axis formation [RAX2]
      Title: Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129245.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within blue light signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Duplicated homeodomain-like superfamily protein
    NP_181226.1
    • REGULATOR OF AXILLARY MERISTEMS 2 (RAX2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 37 (TAIR:AT5G23000.1); Has 8785 Blast hits to 8145 proteins in 459 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 476; Plants - 5916; Viruses - 4; Other Eukaryotes - 1679 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15485619..15487451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336612.1 → NP_001324751.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B126, A0A7G2EGY6
      Conserved Domains (1) summary
      PLN03091
      Location:42 → 158
      PLN03091; hypothetical protein; Provisional

    2. NM_129245.3 → NP_181226.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181226.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A5YZ54, A5YZ55, A5YZ66, Q6R0A1, Q9SJL7, Q9ZTE4
      UniProtKB/TrEMBL
      A0A178VS31, A0A5S9X4L9, A0A7G2EGY6
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 117
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJL7.1

    Gene LinkOut

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