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    Aminotransferase-like, plant mobile domain family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817040, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Aminotransferase-like, plant mobile domain family protein
    Primary source
    TAIR:AT2G25010
    Locus tag
    AT2G25010
    See related
    Araport:AT2G25010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27C12.7; F27C12_7; MAIL1; MAIN-LIKE 1
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (10631531..10633754)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Serine/threonine-protein kinase Rio1 Neighboring gene WRKY DNA-binding protein 60 Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MAIL1 is essential for development of the primary root but not of anchor roots. Ühlken C, et al. Plant Signal Behav, 2014. PMID 25482792, Free PMC Article
    2. PP7L is essential for MAIL1-mediated transposable element silencing and primary root growth. de Luxán-Hernández C, et al. Plant J, 2020 May. PMID 31849124
    3. Arabidopsis proteins with a transposon-related domain act in gene silencing. Ikeda Y, et al. Nat Commun, 2017 May 3. PMID 28466841, Free PMC Article
    4. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. Nicolau M, et al. PLoS Genet, 2020 Apr. PMID 32287271, Free PMC Article
    5. MAIN-LIKE1 is a crucial factor for correct cell division and differentiation in Arabidopsis thaliana. Ühlken C, et al. Plant J, 2014 Apr. PMID 24635680

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana
      Title: The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana.
    2. Arabidopsis genes MAIL1 and MAIN define an alternative silencing pathway independent of DNA methylation and siRNAs. Mutants for MAIL1 or MAIN exhibit release of silencing and appear to show impaired condensation of pericentromeric heterochromatin.
      Title: Arabidopsis proteins with a transposon-related domain act in gene silencing.
    3. MAIL1 is essential for specification of cell fate in the primary root but not in anchor roots.[MAIL1]
      Title: MAIL1 is essential for development of the primary root but not of anchor roots.
    4. MAIN and MAIL1 act in the same pathway, and that both are essential for maintaining correct cell division acitivity in meristematic cells, while MAIL1 has an additional function in differentiating cells.
      Title: MAIN-LIKE1 is a crucial factor for correct cell division and differentiation in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128059.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within meristem maintenance IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within meristem maintenance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of root meristem growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Aminotransferase-like, plant mobile domain family protein
    NP_565582.1
    • Aminotransferase-like, plant mobile domain family protein; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G17930.1); Has 746 Blast hits to 715 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 746; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10631531..10633754
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128059.5 → NP_565582.1  Aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565582.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WN90, Q8LFH9, Q9SK32
      UniProtKB/TrEMBL
      A0A178VZ13, A0A5S9X1E9
      Conserved Domains (1) summary
      pfam10536
      Location:59 → 405
      PMD; Plant mobile domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SK32.1

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