U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GRF9 general regulatory factor 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818859, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GRF9
    Official Full Name
    general regulatory factor 9
    Primary source
    TAIR:AT2G42590
    Locus tag
    AT2G42590
    See related
    Araport:AT2G42590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14N22.14; F14N22_14; general regulatory factor 9; GF14 MU
    Summary
    14-3-3 gene. Binds calcium and displays induced structural changes.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GRF9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (17731830..17733982, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant domain-containing protein / LEA domain-containing protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 39 Neighboring gene tetratricopetide-repeat thioredoxin-like 3 Neighboring gene phosphoenolpyruvate carboxylase 2 Neighboring gene LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Involvement of 14-3-3 protein GRF9 in root growth and response under polyethylene glycol-induced water stress. He Y, et al. J Exp Bot, 2015 Apr. PMID 25873671, Free PMC Article
    2. The 14-3-3 proteins of Arabidopsis regulate root growth and chloroplast development as components of the photosensory system. Mayfield JD, et al. J Exp Bot, 2012 May. PMID 22378945, Free PMC Article
    3. Exposed loop domains of complexed 14-3-3 proteins contribute to structural diversity and functional specificity. Sehnke PC, et al. Plant Physiol, 2006 Feb. PMID 16407442, Free PMC Article
    4. GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia. Omidbakhshfard MA, et al. PLoS Genet, 2018 Jul. PMID 29985961, Free PMC Article
    5. The Arabidopsis 14-3-3 multigene family. Wu K, et al. Plant Physiol, 1997 Aug. PMID 9276953, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Study identified ORG3 as a direct downstream, and positively regulated target of GRF9. Genetic analysis of grf9 org3 and GRF9ox org3 double mutants reveals that both transcription factors act in a regulatory cascade to control the final leaf dimensions by restricting cell number in the developing leaf in Arabidopsis thaliana.
      Title: GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia.
    2. GRF9 is involved in allocating more carbon from the shoot to the root and enhancing proton secretion in the root growing zone, and this process is important for root response to mild water stress.
      Title: Involvement of 14-3-3 protein GRF9 in root growth and response under polyethylene glycol-induced water stress.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001036455.1
    NM_001036456.1
    NM_129820.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein phosphorylated amino acid binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within post-embryonic root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast stroma IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    general regulatory factor 9
    NP_001031532.1
    • general regulatory factor 9 (GRF9); FUNCTIONS IN: protein phosphorylated amino acid binding, calcium ion binding; LOCATED IN: chloroplast stroma, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 12 (TAIR:AT1G26480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001031533.1
    • general regulatory factor 9 (GRF9); FUNCTIONS IN: protein phosphorylated amino acid binding, calcium ion binding; LOCATED IN: chloroplast stroma, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 12 (TAIR:AT1G26480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565977.1
    • general regulatory factor 9 (GRF9); FUNCTIONS IN: protein phosphorylated amino acid binding, calcium ion binding; LOCATED IN: chloroplast stroma, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 12 (TAIR:AT1G26480.1); Has 2711 Blast hits to 2702 proteins in 385 species: Archae - 0; Bacteria - 4; Metazoa - 1258; Fungi - 332; Plants - 762; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17731830..17733982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129820.3 → NP_565977.1  general regulatory factor 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565977.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80367, Q96299
      UniProtKB/TrEMBL
      A0A178VYW7, A0A5S9X6G7
      Conserved Domains (1) summary
      pfam00244
      Location:13 → 234
      14-3-3; 14-3-3 protein

    2. NM_001036455.1 → NP_001031532.1  general regulatory factor 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031532.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IP53
      Conserved Domains (1) summary
      pfam00244
      Location:11 → 237
      14-3-3; 14-3-3 protein

    3. NM_001036456.1 → NP_001031533.1  general regulatory factor 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031533.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IP55
      Conserved Domains (1) summary
      pfam00244
      Location:11 → 237
      14-3-3; 14-3-3 protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96299.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.