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    ribosomal RNA-processing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837665, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ribosomal RNA-processing protein
    Primary source
    TAIR:AT1G11240
    Locus tag
    AT1G11240
    See related
    Araport:AT1G11240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28P6.24; T28P6_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3766754..3769799, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cotton fiber, putative (DUF761) Neighboring gene transmembrane protein, putative (DUF761) Neighboring gene syntaxin of plants 125 Neighboring gene sugar transporter 1 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100996.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal RNA-processing protein
    NP_563886.1
    • CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3766754..3769799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100996.3 → NP_563886.1  ribosomal RNA-processing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563886.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E8Y1, Q8W494
      Conserved Domains (1) summary
      pfam09805
      Location:24 → 81
      Nop25; Nucleolar protein 12 (25kDa)
    Nucleotide Protein
    Heading Accession and Version

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