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    DNA-directed RNA polymerase II protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844125, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-directed RNA polymerase II protein
    Primary source
    TAIR:AT1G77890
    Locus tag
    AT1G77890
    See related
    Araport:AT1G77890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT1G77900; F28K19.10; F28K19_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (29292075..29296160)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene membrane-anchored ubiquitin-fold protein 5 precursor Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene bZIP transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AUTOPHAGY-RELATED14 and Its Associated Phosphatidylinositol 3-Kinase Complex Promote Autophagy in Arabidopsis. Liu F, et al. Plant Cell, 2020 Dec. PMID 33004618, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001124142.2
    NM_001198494.1
    NM_001334803.1
    NM_001334804.1
    NM_106438.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within autophagic cell death IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II protein
    NP_001117614.1
    • DNA-directed RNA polymerase II protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT4G08540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001185423.1
    • DNA-directed RNA polymerase II protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT4G08540.1).
    NP_177912.2
    • DNA-directed RNA polymerase II protein; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT4G08540.1); Has 59 Blast hits to 57 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 3; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29292075..29296160
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106438.4 → NP_177912.2  DNA-directed RNA polymerase II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177912.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBI6, A0A384L4R7, Q0WPV3, Q147F2, Q67Z09
      Conserved Domains (1) summary
      pfam10186
      Location:7 → 367
      Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

    2. NM_001124142.2 → NP_001117614.1  DNA-directed RNA polymerase II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117614.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H442, Q0WPV3, Q67Z09
      Conserved Domains (1) summary
      pfam10186
      Location:7 → 356
      Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

    3. NM_001334803.1 → NP_001323212.1  DNA-directed RNA polymerase II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWE4, Q0WPV3, Q67Z09
      Conserved Domains (1) summary
      pfam10186
      Location:7 → 367
      Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

    4. NM_001198494.1 → NP_001185423.1  DNA-directed RNA polymerase II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185423.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I8K9, Q0WPV3, Q67Z09
      Conserved Domains (1) summary
      pfam10186
      Location:7 → 365
      Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

    5. NM_001334804.1 → NP_001323211.1  DNA-directed RNA polymerase II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBI6, A0A384L4R7, Q0WPV3, Q147F2, Q67Z09
      Conserved Domains (1) summary
      pfam10186
      Location:7 → 367
      Atg14; Vacuolar sorting 38 and autophagy-related subunit 14
    Nucleotide Protein
    Heading Accession and Version

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