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    NAC1 NAC domain containing protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842052, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NAC1
    Official Full Name
    NAC domain containing protein 1
    Primary source
    TAIR:AT1G56010
    Locus tag
    AT1G56010
    See related
    Araport:AT1G56010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anac021; ANAC022; Arabidopsis NAC domain containing protein 21; Arabidopsis NAC domain containing protein 22; F14J16.32; NAC domain containing protein 1
    Summary
    Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)
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    Genomic context

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    See NAC1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (20946571..20949281, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene glycine-rich protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene ncRNA Neighboring gene serine/arginine repetitive matrix-like protein Neighboring gene RING/U-box protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcription factor NAC1 activates expression of peptidase-encoding AtCEPs in roots to limit root hair growth. Rodríguez-García DR, et al. Plant Physiol, 2023 Dec 30. PMID 37801618
    2. NAC1 regulates root ground tissue maturation by coordinating with the SCR/SHR-CYCD6;1 module in Arabidopsis. Xie C, et al. Mol Plant, 2023 Apr 3. PMID 36809880
    3. Expression of NAC1 up-stream regulatory region and its relationship to the lateral root initiation induced by gibberellins and auxins. Wang Y, et al. Sci China C Life Sci, 2006 Oct. PMID 17172049
    4. Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Xie Q, et al. Genes Dev, 2000 Dec 1. PMID 11114891, Free PMC Article
    5. In silico analysis on structure and DNA binding mode of AtNAC1, a NAC transcription factor from Arabidopsis thaliana. Zhu Q, et al. J Mol Model, 2014 Mar. PMID 24570356

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Transcription factor NAC1 activates expression of peptidase-encoding AtCEPs in roots to limit root hair growth.
      Title: Transcription factor NAC1 activates expression of peptidase-encoding AtCEPs in roots to limit root hair growth.
    2. NAC1 regulates root ground tissue maturation by coordinating with the SCR/SHR-CYCD6;1 module in Arabidopsis.
      Title: NAC1 regulates root ground tissue maturation by coordinating with the SCR/SHR-CYCD6;1 module in Arabidopsis.
    3. Data indicate that the structure of NAC transcription factor AtNAC1 monomer contained four alpha-helices and eight beta-sheets.
      Title: In silico analysis on structure and DNA binding mode of AtNAC1, a NAC transcription factor from Arabidopsis thaliana.
    4. Molecular mechanisms underlying the cold temperature regulation of flowering time of Arabidopsis are controled by NAC1.
      Title: Control of flowering time and cold response by a NAC-domain protein in Arabidopsis.
    5. up-stream regulatory fragment of NAC1 responded to plant hormones
      Title: Expression of NAC1 up-stream regulatory region and its relationship to the lateral root initiation induced by gibberellins and auxins.
    6. Our results indicate that auxin induction of miR164 provides a homeostatic mechanism to clear NAC1 mRNA to downregulate auxin signals.
      Title: MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104479.2
    NM_179486.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within auxin-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root development TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NAC domain containing protein 1
    NP_175997.1
    • NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1); Has 2928 Blast hits to 2921 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2928; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849817.1
    • NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1); Has 2736 Blast hits to 2731 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2736; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20946571..20949281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104479.2 → NP_175997.1  NAC domain containing protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175997.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WRG2, Q84TE6, Q9SE10, Q9SGS9
      UniProtKB/TrEMBL
      A0A178W7B2, A0A5S9WS37, A0A7G2E176
      Conserved Domains (1) summary
      pfam02365
      Location:20 → 145
      NAM; No apical meristem (NAM) protein

    2. NM_179486.2 → NP_849817.1  NAC domain containing protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849817.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84TE6
      Conserved Domains (1) summary
      pfam02365
      Location:53 → 78
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84TE6.2

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