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    Beta-glucosidase, GBA2 type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840261, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Beta-glucosidase, GBA2 type family protein
    Primary source
    TAIR:AT1G33700
    Locus tag
    AT1G33700
    See related
    Araport:AT1G33700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M2.16; F14M2_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    20
    Sequence:
    Chromosome: 1; NC_003070.9 (12208308..12214313, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene KH domain-containing protein Neighboring gene ncRNA Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis KH-domain protein FLOWERING LOCUS Y delays flowering by upregulating FLOWERING LOCUS C family members. Dai GY, et al. Plant Cell Rep, 2020 Dec. PMID 32948902
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Arabidopsis KH-domain protein FLOWERING LOCUS Y delays flowering by upregulating FLOWERING LOCUS C family members.
      Title: The Arabidopsis KH-domain protein FLOWERING LOCUS Y delays flowering by upregulating FLOWERING LOCUS C family members.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001036058.3
    NM_001333056.1
    NM_001333057.1
    NM_103090.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucosylceramidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in glucosylceramide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Beta-glucosidase, GBA2 type family protein
    NP_001031135.1
    • Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT4G10060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_174631.2
    • Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT4G10060.1); Has 876 Blast hits to 742 proteins in 181 species: Archae - 75; Bacteria - 301; Metazoa - 144; Fungi - 1; Plants - 263; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12208308..12214313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036058.3 → NP_001031135.1  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031135.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEQ9, A0A384KC76, A0A5S9WIJ3, F4HR96, Q84W58
      Conserved Domains (2) summary
      pfam04685
      Location:520 → 880
      DUF608; Glycosyl-hydrolase family 116, catalytic region
      pfam12215
      Location:95 → 408
      Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

    2. NM_103090.4 → NP_174631.2  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174631.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEQ9, A0A384KC76, A0A5S9WIJ3, F4HR96, Q84W58
      Conserved Domains (2) summary
      pfam04685
      Location:520 → 880
      DUF608; Glycosyl-hydrolase family 116, catalytic region
      pfam12215
      Location:95 → 408
      Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

    3. NM_001333056.1 → NP_001320624.1  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEQ9, A0A384KC76, A0A5S9WIJ3, F4HR96, Q84W58
      Conserved Domains (2) summary
      pfam04685
      Location:520 → 880
      DUF608; Glycosyl-hydrolase family 116, catalytic region
      pfam12215
      Location:95 → 408
      Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

    4. NM_001333057.1 → NP_001320625.1  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AND8, A0A5S9WIJ3, Q84W58
    Nucleotide Protein
    Heading Accession and Version

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