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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839418, updated on 18-Sep-2024

    Summary

    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G04770
    Locus tag
    AT1G04770
    See related
    Araport:AT1G04770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13M7.24; F13M7_24
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (1336274..1337849, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 721 Neighboring gene ncRNA Neighboring gene vesicle-associated membrane protein 726 Neighboring gene uncharacterized protein Neighboring gene Ankyrin repeat family protein Neighboring gene RING/U-box superfamily protein Neighboring gene glycine-rich protein

    General gene information

    NM_100355.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_171969.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1336274..1337849 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100355.4 → NP_171969.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171969.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WU73, Q8L730, Q9MAS6
      UniProtKB/TrEMBL
      A0A178WHH9, A0A5S9SM60, A0A7G2DSU4
      Conserved Domains (2) summary
      sd00006
      Location:159 → 189
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:160 → 192
      TPR_1; Tetratricopeptide repeat
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