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    CLE9 CLAVATA3/ESR-RELATED 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839200, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLE9
    Official Full Name
    CLAVATA3/ESR-RELATED 9
    Primary source
    TAIR:AT1G26600
    Locus tag
    AT1G26600
    See related
    Araport:AT1G26600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLAVATA3/ESR-RELATED 9; T1K7.3; T1K7_3
    Summary
    Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.
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    Genomic context

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    See CLE9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (9191503..9192590)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ELM2 domain protein Neighboring gene C2H2-like zinc finger protein Neighboring gene C2H2-like zinc finger protein Neighboring gene T-box transcription factor, putative (DUF863)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in Arabidopsis thaliana. Zhang L, et al. Plant Cell Environ, 2019 Mar. PMID 30378140
    2. The CLE9/10 secretory peptide regulates stomatal and vascular development through distinct receptors. Qian P, et al. Nat Plants, 2018 Dec. PMID 30518839
    3. Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature. Hazak O, et al. EMBO Rep, 2017 Aug. PMID 28607033, Free PMC Article
    4. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. role in stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide
      Title: CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in Arabidopsis thaliana.
    2. The authors report that the peptide hormone CLAVATA3/ESR-RELATED 9/10 (CLE9/10) regulates two different developmental processes, stomatal lineage development and xylem development, through two distinct receptor systems in Arabidopsis thaliana.
      Title: The CLE9/10 secretory peptide regulates stomatal and vascular development through distinct receptors.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_102422.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell-cell signaling involved in cell fate commitment ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in maintenance of root meristem identity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in phloem development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of cell differentiation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CLAVATA3/ESR-RELATED 9
    NP_564251.1
    • CLAVATA3/ESR-RELATED 9 (CLE9); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 10 (TAIR:AT1G69320.1); Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9191503..9192590
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332720.1 → NP_001323415.1  CLAVATA3/ESR-RELATED 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AX22

    2. NM_102422.3 → NP_564251.1  CLAVATA3/ESR-RELATED 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564251.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCX2, Q9FZE4
      UniProtKB/TrEMBL
      A0A178WMR4, A0A5S9W1B7, A0A654EI73
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZE4.2

    Gene LinkOut

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