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    GH9C1 glycosyl hydrolase 9C1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841315, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9C1
    Official Full Name
    glycosyl hydrolase 9C1
    Primary source
    TAIR:AT1G48930
    Locus tag
    AT1G48930
    See related
    Araport:AT1G48930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9C1; F27K7.5; glycosyl hydrolase 9C1
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    Genomic context

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    See GH9C1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (18101643..18104768, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Flavin-containing monooxygenase family protein Neighboring gene uncharacterized protein Neighboring gene nucleolin like 1 Neighboring gene early nodulin-like protein 6 Neighboring gene C3HC zinc finger-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A tale of two tissues: AtGH9C1 is an endo-β-1,4-glucanase involved in root hair and endosperm development in Arabidopsis. del Campillo E, et al. PLoS One, 2012. PMID 23173056, Free PMC Article
    2. Manipulation of two α-endo-β-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots. Woo MO, et al. Mol Plant Pathol, 2014 Dec. PMID 24844661, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the ectopic expression of AtCel6 in soybean roots reduces susceptibility to soybean cyst nematode (SCN) and root knot nematode and Suppression of GmCel7, the soybean homologue of AtCel2, in soybean roots also reduces the susceptibility to SCN. [AtCel6]
      Title: Manipulation of two α-endo-β-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots.
    2. role of AtGH9C1 in root hair and endosperm development in Arabidopsis
      Title: A tale of two tissues: AtGH9C1 is an endo-β-1,4-glucanase involved in root hair and endosperm development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103786.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9C1
    NP_175323.1
    • glycosyl hydrolase 9C1 (GH9C1); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1873 Blast hits to 1853 proteins in 259 species: Archae - 2; Bacteria - 684; Metazoa - 175; Fungi - 17; Plants - 924; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18101643..18104768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103786.3 → NP_175323.1  glycosyl hydrolase 9C1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175323.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M995
      UniProtKB/TrEMBL
      A0A178WME9, A0A5S9WK76, A0A654EGX5
      Conserved Domains (1) summary
      PLN02340
      Location:1 → 627
      PLN02340; endoglucanase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M995.1

    Gene LinkOut

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