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    ATL8 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843974, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATL8
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT1G76410
    Locus tag
    AT1G76410
    See related
    Araport:AT1G76410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15M4.9
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    Genomic context

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    See ATL8 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (28668664..28669652)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Ribophorin I Neighboring gene outer envelope pore 21B-like protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene phosphate transporter 1;9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATL8, a RING E3 ligase, modulates root growth and phosphate homeostasis in Arabidopsis. Ramaiah M, et al. Plant Physiol Biochem, 2022 May 15. PMID 35325659
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ATL8, a RING E3 ligase, modulates root growth and phosphate homeostasis in Arabidopsis.
      Title: ATL8, a RING E3 ligase, modulates root growth and phosphate homeostasis in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_106291.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_177767.1
    • ATL8; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G20823.1); Has 9001 Blast hits to 8977 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2299; Fungi - 634; Plants - 4930; Viruses - 29; Other Eukaryotes - 1109 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28668664..28669652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106291.3 → NP_177767.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177767.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LC69, Q9S783
      UniProtKB/TrEMBL
      A0A178WF21, A0A5S9WUV0
      Conserved Domains (1) summary
      cd16454
      Location:103 → 146
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LC69.2

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